NYMU Taipei/Lab Notes/2007 8 6&7

From 2007.igem.org

Lab schedule

  • mouse insulin gene cloning (8/6 to 8/7)
    • primer design for insulin II of Mus musculus, MN_008387.3 transcript
      • sequence for standard assembly (marked in green) and PCR reaction (marked in red)
      • primer for A chain
        • translation (90-110): GIVDQCCTSICSLYQLENYCN
        • transcript (341-403): GGCATTGTAGATCAGTGCTGCACCAGCATCTGCTCCCTCTACCAGCTGGAGAACTACTGCAAC, 63 bp
        • left: GTTTCTTCGAATTCGCGGCCGCTTCTAGATGGGCATTGTAGATCAGTGCTG
        • right: GTTTCTTCCTGCAGCGGCCGCTACTAGTATTATTAGTTGCAGTAGTTCTCCAGCT
        • Potential dimer formation! Do NOT use this pair of primers! We need a new design.
      • primer for B chain
        • translation (25-54): FVKQHLCGSHLVEALYLVCGERGFFYTPMS
        • transcript (146-235):TTTGTCAAGCAGCACCTTTGTGGTTCCCACCTGGTGGAGGCTCTCTACCTGGTGTGTGGGGAGCGTGGCTTCTTCTACACACCCATGTCC, 90 bp
        • left: GTTTCTTCGAATTCGCGGCCGCTTCTAGATGTTTGTCAAGCAGCACCTTTGT
        • right: GTTTCTTCCTGCAGCGGCCGCTACTAGTATTATTAGGACATGGGTGTGTAGAAGA
  • purchase of BCRC human insulin clone (ordered not paid)
  • cutting sites of iGEM 2007 parts
    • ompR binding ompC promoter
      • ompR binding site (C1, C2, C3) extraction
      • assembly to insulin
    • tar-EnvZ fusion construct: cut EnvZ part for our fusion construct
  • antibiotics LB plate preparation
    • ampicillin
    • kanamycin

0806Plates.jpg