User:Hongwu

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Hi, I'm Hongwu Ma from the [http://www.bioinformatics.ed.ac.uk/csb/ computational systems biology] group in the school of Informatics. I have research experiences on the analysis of  bacteria regulatory networks. Two related publications are:
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Hi, I'm Hongwu Ma, the Informatics instructor for the Edinburgh iGEM 2007 team. I have research experiences on the analysis of  bacteria regulatory networks. I would be very happy to contribute to the project and would like to share my experience and ideas with you.
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HW Ma, B Kumar, U Ditges, F Gunzer, J Buer, AP Zeng (2004) An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs, Nucleic Acid Research, 32(22), 6643-6649.
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Thanks,
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HW Ma, J Buer, AP Zeng (2004) Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach, BMC Bioinformatics, 5, 199. 
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Hongwu
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I would be very happy to contribute to the project and would like to share my experience and ideas with you.
 
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Thanks,
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and here's my [https://static.igem.org/mediawiki/2007/e/e5/Igemmodel-Ma.pdf talk on modelling]
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Hongwu
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'''Papers on modeling of gene regulation process'''
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*''strcuture and function of the feed-forward loop network motif''
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Mangan S, Alon U, ''Proc Natl Acad Sci U S A.'' 2003, 100:11980-11985
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[http://www.pnas.org/cgi/content/full/100/21/11980 Link]
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*''Design of gene circuits: lessons from bacteria''
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Wall ME, Hlavacek WS, Savageau MA ''Nature review genetics'' 2004, 5:34
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[http://www.nature.com/nrg/journal/v5/n1/full/nrg1244_fs.html Link]
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*''Design principles for regulator gene expression in a repressible gene circuit''
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Wall ME, Hlavacek WS, Savageau MA ''J mol Biol'' 2003, 332:861-876
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*''A synthetic oscillatory network of transcriptional regulators''
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Elowitz MB, Leibler S, ''Nature'' 2000, 403:335

Latest revision as of 14:02, 27 June 2007

Hi, I'm Hongwu Ma, the Informatics instructor for the Edinburgh iGEM 2007 team. I have research experiences on the analysis of bacteria regulatory networks. I would be very happy to contribute to the project and would like to share my experience and ideas with you.

Thanks,

Hongwu


and here's my talk on modelling

Papers on modeling of gene regulation process

  • strcuture and function of the feed-forward loop network motif

Mangan S, Alon U, Proc Natl Acad Sci U S A. 2003, 100:11980-11985 [http://www.pnas.org/cgi/content/full/100/21/11980 Link]

  • Design of gene circuits: lessons from bacteria

Wall ME, Hlavacek WS, Savageau MA Nature review genetics 2004, 5:34 [http://www.nature.com/nrg/journal/v5/n1/full/nrg1244_fs.html Link]

  • Design principles for regulator gene expression in a repressible gene circuit

Wall ME, Hlavacek WS, Savageau MA J mol Biol 2003, 332:861-876

  • A synthetic oscillatory network of transcriptional regulators

Elowitz MB, Leibler S, Nature 2000, 403:335

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