Glasgow/Wetlab/DryWeek1
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| - | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and signalling pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered Loop and Switch functions. | + | We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered Loop and Switch functions. |
=== 04/07 === | === 04/07 === | ||
Revision as of 14:47, 27 September 2007
| Tutorials | *References* | *Resources* | *Orders* | *Biobricks* Used | *Gels* |
Contents |
Week 1
02/07
After a brief re-introduction to the Laboratory and our project proposal, we outlined a 6-PHASE approach to guide our practice over the summer.
From here the Modellers began working on basic Matlab modelling tutorials, designed by Xu Gu, to allow all modellers to reach a satisfactory ability. By the end of the day we had completed a number of [http://en.wikipedia.org/wiki/Law_of_mass_action Mass-action] programs using the ode45 funtion and grasped the translation from basic notaion into Substrate, Enzyme and S/E-complex notation.
03/07
We developed our modelling techniques by programming responses to basic [http://en.wikipedia.org/wiki/Metabolic_pathway metabolic] and [http://en.wikipedia.org/wiki/Cell_signaling signalling] pathways. We then learnt more precise techniques of modelling, e.g. accuracy and tolerace variance and noting parameters. We then covered Loop and Switch functions.
04/07
We were introduced to the 'Nested Functions' to allow for simpler programming, and the basic ideas behind Sensitivity of output due to a range of possible values of varying constants.
In the afternoon, all modellers were shown some Wetlab techniques for the sake of a more thorough understanding of the processes involved.
Our experiment was to extract plasmids from a number of different bacterial cultures.
05/07
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| Tutorials | *References* | *Resources* | *Orders* | *Biobricks* Used | *Gels* |
