Template:BerkiGEM2007 SamanthaSequencingFiles
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Revision as of 20:32, 8 August 2007 by Samanthaliang (Talk | contribs)
Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
SIL001 | 6-6 | pBca1101-I716201 | 1 | ca998 | wrong, nonsense | SIL001 |
SIL002 | 6-6 | pBca1101-I716202 | 1 | ca998 | wrong | SIL002 |
SIL003 | 6-6 | pBca1101-I716202 | 2 | ca998 | wrong | SIL003 |
SIL004 | 6-6 | pBca1101-I716203 | 1 | ca998 | wrong | SIL004 |
SIL005 | 6-6 | pBca1101-I716203 | 2 | ca998 | wrong | SIL005 |
SIL006 | 6-6 | pBca9145-I716204 | 1 | ca998 | perfect | SIL006 |
SIL007 | 6-6 | pBca9145-I716204 | 2 | ca998 | perfect | SIL007 |
SIL008 | 6-6 | pBca9145-I716205 | 1 | ca998 | good | SIL008 |
SIL009 | 6-6 | pBca9145-I716205 | 2 | ca998 | wrong, no terminator | SIL009 |
SIL010 | 6-6 | pBca9145-I716206 | 1 | ca998 | perfect | SIL010 |
SIL011 | 6-6 | pBca9145-I716206 | 2 | ca998 | perfect | SIL011 |
SIL012 | 6-8 | pBca9145-I716207 | 1 | ca998 | perfect | SIL012 |
SIL013 | 6-8 | pBca9145-I716207 | 2 | ca998 | good | SIL013 |
SIL014 | 6-8 | pBca9145-I716208 | 1 | ca998 | perfect | SIL014 |
SIL015 | 6-8 | pBca9145-I716208 | 2 | ca998 | wrong, [lox] only | SIL015 |
SIL016 | 6-9 | pBca9145-I716209 | 1 | ca998 | good but not long enough | SIL016 |
SIL017 | 6-9 | pBca9145-I716209 | 2 | ca998 | good but not long enough | SIL017 |
SIL018 | 6-9 | pBca9145-I716210 | 1 | ca998 | good | SIL018 |
SIL019 | 6-9 | pBca9145-I716210 | 2 | ca998 | perfect | SIL019 |
SIL020 | 6-9 | pBca9145-I716211 | 1 | ca998 | good but not long enough | SIL020 |
SIL021 | 6-9 | pBca9145-I716211 | 2 | ca998 | good but not long enough | SIL021 |
SIL022 | 6-9 | pBca9145-I716212 | 1 | ca998 | nope, still ATG start codon | SIL022 |
SIL023 | 6-9 | pBca9145-I716212 | 2 | ca998 | nope, still ATG start codon | SIL023 |
SIL024 | 6-9 | pBca9145-I716213 | 1 | ca998 | good but not long enough | SIL024 |
SIL025 | 6-9 | pBca9145-I716213 | 2 | ca998 | good but not long enough | SIL025 |
Contents |
Start 26
SIL026 | 6-11 | pBca9145-I716209 | 1 | G01001 | perfect | SIL026 |
SIL027 | 6-11 | pBca9145-I716209 | 2 | G01001 | perfect | SIL027 |
SIL028 | 6-11 | pBca9145-I716211 | 1 | G01001 | perfect | SIL028 |
SIL029 | 6-11 | pBca9145-I716211 | 2 | G01001 | 1bp deletion | SIL029 |
SIL030 | 6-11 | pBca9145-I716213 | 2 | G01001 | perfect | SIL030 |
SIL031 | 6-12 | pBca9145-I716214 | 1 | ca998 | bad read | SIL031 |
SIL032 | 6-12 | pBca9145-I716214 | 2 | ca998 | good | SIL032 |
SIL033 | 6-12 | pBca9145-I716215 | 1 | ca998 | bad read | SIL033 |
SIL034 | 6-12 | pBca9145-I716215 | 2 | ca998 | good | SIL034 |
SIL035 | 6-13 | pBca9145-I716212 | 1 | ca998 | bad read | SIL035 |
SIL036 | 6-13 | pBca9145-I716212 | 2 | ca998 | wrong - still ATG start | SIL036 |
SIL037 | 6-15 | pBca9145-I716216 | 1 | ca998 | wrong - cassette only | SIL037 |
SIL038 | 6-15 | pBca9145-I716220 | 1 | ca998 | perfect | SIL038 |
SIL039 | 6-15 | pBca9145-I716221 | 1 | ca998 | perfect | SIL039 |
SIL040 | 6-15 | pBca9145-I716222 | 1 | ca998 | perfect | SIL040 |
SIL041 | 6-15 | pBca9145-I716223 | 1 | ca998 | wrong - missing cassette | SIL041 |
SIL042 | 6-19 | pBca9145-I716212 | 1 | ca998 | good | SIL042 |
SIL043 | 6-19 | pBca9145-I716216 | 2 | ca998 | perfect! finally! | SIL043 |
SIL044 | 6-20 | pBca9145-I716216 | 2 | ca998 | bad read | SIL044 |
SIL045 | 6-20 | pBca9145-I716216 | 3 | ca998 | bad read - only Cre though | SIL045 |
SIL046 | 6-20 | pBca9145-I716217 | 1 | ca998 | bad read - only Cre though | SIL046 |
SIL047 | 6-20 | pBca9145-I716217 | 2 | ca998 | weird - missing a lox site | SIL047 |
SIL048 | 6-20 | pBca9145-I716218 | 1 | ca998 | messy but should be right | SIL048 |
SIL049 | 6-20 | pBca9145-I716218 | 2 | ca998 | perfect | SIL049 |
SIL050 | 6-20 | pBca9145-I716219 | 1 | ca998 | perfect | SIL050 |
Start 51
SIL051 | 6-20 | pBca9145-I716219 | 2 | ca998 | perfect | SIL051 |
SIL052 | 6-20 | pBca9145-I716222 | 2 | ca998 | wrong | SIL052 |
SIL053 | 6-20 | pBca9145-I716222 | 3 | ca998 | perfect | SIL053 |
SIL054 | 6-20 | pBca9145-I716223 | 1 | ca998 | perfect! | SIL054 |
SIL055 | 6-20 | pBca9145-I716223 | 4 | ca998 | perfect | SIL055 |
SIL056 | 6-26 | pBca9145-I716216 | R1 | ca998 | no ceaB | SIL056 |
SIL057 | 6-26 | pBca9145-I716217 | R4 | ca998 | no ceaB | SIL057 |
SIL058 | 6-26 | pBca9145-I716217 | R5 | ca998 | no ceaB | SIL058 |
SIL059 | 6-26 | pBca9145-I716224 | 1 | ca998 | perfect | SIL059 |
SIL060 | 6-26 | pBca9145-I716225 | 2 | ca998 | perfect | SIL060 |
SIL061 | 6-26 | pBca9145-I716226 | 3 | ca998 | perfect | SIL061 |
SIL062 | 7-02 | pBca9145-I716216 | ddbs4 | ca998 | possible point mutatiion | SIL062 |
SIL063 | 7-02 | pBca9145-I716217 | dbbs3 | ca998 | perfect | SIL063 |
SIL064 | 7-11 | pBca9145-I716401 | 1 | ca998 | still has CamR -no pbad | SIL064 |
SIL065 | 7-11 | pBca9145-I716402 | 1 | ca998 | perfect | SIL065 |
SIL066 | 7-11 | pBca9145-I716403 | 1 | ca998 | perfect | SIL066 |
SIL067 | 7-11 | pBca9145-I716404 | 1 | ca998 | perfect | SIL067 |
SIL068 | 7-11 | pBca9145-I716405 | 1 | ca998 | perfect | SIL068 |
SIL069 | 7-11 | pBca9145-I716406 | 1 | ca998 | looks good - but mixed template | SIL069 |
SIL070 | 7-11 | pBca9145-I716407 | 1 | ca998 | badly mixed template | SIL070 |
SIL071 | 7-11 | pBca9145-I716408 | 1 | ca998 | good | SIL071 |
SIL072 | 7-11 | pBca9145-I716409 | 1 | ca998 | badly mixed template | SIL072 |
SIL073 | 7-11 | pBca9145-I716410 | 1 | ca998 | still has CamR - no pBad | SIL073 |
SIL074 | 7-11 | pBca9145-I716411 | 1 | ca998 | perfect | SIL074 |
SIL075 | 7-11 | pBca9145-I716412 | 1 | ca998 | perfect | SIL075 |
Start 76
SIL076 | 7-11 | pBca9145-I716413 | 1 | ca998 | good | SIL076 |
SIL077 | 7-11 | pBca9145-I716414 | 1 | ca998 | good | SIL077 |
SIL078 | 7-11 | pBca9145-I716415 | 1 | ca998 | looks good, but a little mixed read | SIL078 |
SIL079 | 7-17 | pBca9145-I716401 | 2 | ca998 | perfect | SIL079 |
SIL080 | 7-17 | pBca9145-I716407 | 2 | ca998 | perfect | SIL080 |
SIL081 | 7-17 | pBca9145-I716409 | 2 | ca998 | mixed-can see part of pbad | SIL081 |
SIL082 | 7-17 | pBca9145-I716410 | 2 | ca998 | perfect | SIL082 |
SIL083 | 7-17 | pBca9145-I716416 | 1 | ca998 | CamR instead of pbad | SIL083 |
SIL084 | 7-17 | pBca9145-I716417 | 1 | ca998 | good | SIL084 |
SIL085 | 7-17 | pBca9145-I716418 | 1 | ca998 | CamR instead of pbad | SIL085 |
SIL086 | 7-17 | pBca9145-I716419 | 1 | ca998 | CamR instead of pbad | SIL086 |
SIL087 | 7-17 | pBca9145-I716420 | 1 | ca998 | mixed template - no match | SIL087 |
SIL088 | 7-17 | pBca9145-I716421 | 1 | ca998 | CamR instead of pbad | SIL088 |
SIL089 | 7-17 | pBca9145-I716422 | 1 | ca998 | perfect | SIL089 |
SIL090 | 7-17 | pBca9145-I716422 | 4 | ca998 | perfect | SIL090 |
SIL091 | 7-17 | pBca9145-I716423 | 1 | ca998 | perfect | SIL091 |
SIL092 | 7-17 | pBca9145-I716423 | 3 | ca998 | perfect | SIL092 |
SIL093 | 7-20 | pBca9145-I716408C | 1 | ca998 | recombination | SIL093 |
SIL094 | 7-20 | pBca9145-I716408E | 1 | ca998 | recombination | SIL094 |
SIL095 | 7-20 | pBca9145-I716408C | 1 | G01001 | recombination | SIL095 |
SIL096 | 7-20 | pBca9145-I716408E | 1 | G01001 | recombination | SIL096 |
SIL097 | 7-26 | pBca1101-I716436 | 2 | ca998 | weak signal | SIL097 |
SIL098 | 7-26 | pBca1101-I716436 | 4 | ca998 | perfect | SIL098 |
SIL099 | 7-26 | pBca9145-I716437 | 1 | ca998 | perfect | SIL099 |
SIL100 | 7-26 | pBca9145-I716437 | 2 | ca998 | perfect | SIL100 |
Start 101
Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
SIL101 | 7-31 | Bca1101-I716438 | 1 | ca998 | only TT | SIL101 |
SIL102 | 7-31 | Bca9145-I716439 | 1 | ca998 | only TT | SIL102 |
SIL103 | 7-31 | Bca9145-I716439 | 2 | ca998 | wrong | SIL103 |
SIL104 | 7-31 | Bca9145-I716440 | 1 | ca998 | good but need G01001 too | SIL104 |
SIL105 | 7-31 | Bca9145-I716441 | 1 | ca56 | perfect | SIL105 |
SIL106 | 7-31 | Bca9145-I716441 | 2 | ca56 | perfect | SIL106 |
SIL107 | 8-3 | Bca1101-I716438 | 1 | ca998 | good-needs reverse | SIL107 |
SIL108 | 8-3 | Bca1101-I716438 | 4 | ca998 | good-needs reverse | SIL108 |
SIL109 | 8-3 | Bca9145-I716439 | 1 | ca998 | good-needs reverse | SIL109 |
SIL110 | 8-3 | Bca9145-I716439 | 3 | ca998 | good-needs reverse | SIL110 |
SIL111 | 8-3 | Bca9145-I716442 | 2 | ca56 | perfect | SIL111 |
SIL112 | 8-3 | Bca9145-I716442 | 3 | ca56 | perfect | SIL112 |
SIL113 | 8-7 | Bca9145-I716443 | 2 | G01001 | ??? | SIL113 |
SIL114 | 8-7 | Bca9145-I716443 | 3 | G01001 | ??? | SIL114 |
SIL115 | 8-7 | Bca9145-I716444 | 2 | G01001 | ??? | SIL115 |
SIL116 | 8-7 | Bca9145-I716444 | 4 | G01001 | ??? | SIL116 |
SIL117 | 8-7 | Bca9145-I716438 | 1 | G01001 | ??? | SIL117 |
SIL118 | 8-7 | Bca9145-I716438 | 4 | G01001 | ??? | SIL118 |
SIL119 | 8-7 | Bca9145-I716439 | 1 | G01001 | ??? | SIL119 |
SIL120 | 8-7 | Bca9145-I716439 | 3 | G01001 | ??? | SIL120 |
SIL121 | 8-7 | Bca9145-I716449 | 1 | ca56 | ??? | SIL121 |
SIL122 | 8-7 | Bca9145-I716449 | 2 | ca56 | ??? | SIL122 |
SIL123 | 8-7 | Bca9145-I716450 | 1 | ca56 | ??? | SIL123 |
SIL124 | 8-7 | Bca9145-I716450 | 2 | ca56 | ??? | SIL124 |
SIL125 | 8-7 | Bca9145-I716455 | 1 | ca56 | ??? | SIL125 |
Start 126
Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
SIL126 | 8-7 | Bca9145-I716456 | 1 | ca56 | ??? | SIL126 |
SIL127 | 8-7 | Bca9145-I716457 | 1 | ca56 | ??? | SIL127 |
SIL128 | 8-7 | Bca9145-I716458 | 1 | ca56 | ??? | SIL128 |
SIL129 | ??? | ??? | ??? | ??? | ??? | SIL129 |
SIL130 | ??? | ??? | ??? | ??? | ??? | SIL130 |
SIL131 | ??? | ??? | ??? | ??? | ??? | SIL131 |
SIL132 | ??? | ??? | ??? | ??? | ??? | SIL132 |
SIL133 | ??? | ??? | ??? | ??? | ??? | SIL133 |
SIL134 | ??? | ??? | ??? | ??? | ??? | SIL134 |
SIL135 | ??? | ??? | ??? | ??? | ??? | SIL135 |
SIL136 | ??? | ??? | ??? | ??? | ??? | SIL136 |
SIL137 | ??? | ??? | ??? | ??? | ??? | SIL137 |
SIL138 | ??? | ??? | ??? | ??? | ??? | SIL138 |
SIL139 | ??? | ??? | ??? | ??? | ??? | SIL139 |
SIL140 | ??? | ??? | ??? | ??? | ??? | SIL140 |
SIL141 | ??? | ??? | ??? | ??? | ??? | SIL141 |
SIL142 | ??? | ??? | ??? | ??? | ??? | SIL142 |
SIL143 | ??? | ??? | ??? | ??? | ??? | SIL143 |
SIL144 | ??? | ??? | ??? | ??? | ??? | SIL144 |
SIL145 | ??? | ??? | ??? | ??? | ??? | SIL145 |
SIL146 | ??? | ??? | ??? | ??? | ??? | SIL146 |
SIL147 | ??? | ??? | ??? | ??? | ??? | SIL147 |
SIL148 | ??? | ??? | ??? | ??? | ??? | SIL148 |
SIL149 | ??? | ??? | ??? | ??? | ??? | SIL149 |
SIL150 | ??? | ??? | ??? | ??? | ??? | SIL150 |
Start 151
Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
SIL151 | ??? | ??? | ??? | ??? | ??? | SIL151 |
SIL152 | ??? | ??? | ??? | ??? | ??? | SIL152 |
SIL153 | ??? | ??? | ??? | ??? | ??? | SIL153 |
SIL154 | ??? | ??? | ??? | ??? | ??? | SIL154 |
SIL155 | ??? | ??? | ??? | ??? | ??? | SIL155 |
SIL156 | ??? | ??? | ??? | ??? | ??? | SIL156 |
SIL157 | ??? | ??? | ??? | ??? | ??? | SIL157 |
SIL158 | ??? | ??? | ??? | ??? | ??? | SIL158 |
SIL159 | ??? | ??? | ??? | ??? | ??? | SIL159 |
SIL160 | ??? | ??? | ??? | ??? | ??? | SIL160 |
SIL161 | ??? | ??? | ??? | ??? | ??? | SIL161 |
SIL162 | ??? | ??? | ??? | ??? | ??? | SIL162 |
SIL163 | ??? | ??? | ??? | ??? | ??? | SIL163 |
SIL164 | ??? | ??? | ??? | ??? | ??? | SIL164 |
SIL165 | ??? | ??? | ??? | ??? | ??? | SIL165 |
SIL166 | ??? | ??? | ??? | ??? | ??? | SIL166 |
SIL167 | ??? | ??? | ??? | ??? | ??? | SIL167 |
SIL168 | ??? | ??? | ??? | ??? | ??? | SIL168 |
SIL169 | ??? | ??? | ??? | ??? | ??? | SIL169 |
SIL170 | ??? | ??? | ??? | ??? | ??? | SIL170 |
SIL171 | ??? | ??? | ??? | ??? | ??? | SIL171 |
SIL172 | ??? | ??? | ??? | ??? | ??? | SIL172 |
SIL173 | ??? | ??? | ??? | ??? | ??? | SIL173 |
SIL174 | ??? | ??? | ??? | ??? | ??? | SIL174 |
SIL175 | ??? | ??? | ??? | ??? | ??? | SIL175 |