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	crtN-F    5’gctagCTCGAGttaGGATCCtcagtaactggctgacaagcct3’		crtN-F    5’gctagCTCGAGttaGGATCCtcagtaactggctgacaagcct3’
	crtN-R    3’ccaaaAGATCTgtgaaacatacagcaaaaaacctgggt5’		crtN-R    3’ccaaaAGATCTgtgaaacatacagcaaaaaacctgggt5’
-
	bchB-F    5'ttaaGAATTCaagaaggagatatacatATGGGCGGAAGCGGGGTGGCTGGA		bchB-F    5'ttaaGAATTCaagaaggagatatacatATGGGCGGAAGCGGGGTGGCTGGA
	bchB-R    3'ttaGGATCCccgttcgccttggtttgacttact5'		bchB-R    3'ttaGGATCCccgttcgccttggtttgacttact5'
-
	bchE-F    ccaaagatctAAGAAGGAGATATACATatgcgcatactgatgatcca		bchE-F    ccaaagatctAAGAAGGAGATATACATatgcgcatactgatgatcca
	bchE-R    gctagCTCGAGtattttcatcatgcctctcgt		bchE-R    gctagCTCGAGtattttcatcatgcctctcgt
-
	bchI-F    ttaaGAATTCaagaaggagatatacatATGACGGAAGTGCAAAACAAT		bchI-F    ttaaGAATTCaagaaggagatatacatATGACGGAAGTGCAAAACAAT
	bchI-R    ttaGGATCCtcggggctgagaaggcgggagca		bchI-R    ttaGGATCCtcggggctgagaaggcgggagca
-
	bchL-F    ttaaGAATTCaagaaggagatatacatATGATCATCGCGGTCTACGGA		bchL-F    ttaaGAATTCaagaaggagatatacatATGATCATCGCGGTCTACGGA
	bchL-R    ttaGGATCCttgggcagaaggtgtggaagca		bchL-R    ttaGGATCCttgggcagaaggtgtggaagca
-
	bchM-F    ttaaGAATTCaagaaggagatatacatATGGCAAACGAAGTAAATTC		bchM-F    ttaaGAATTCaagaaggagatatacatATGGCAAACGAAGTAAATTC
	bchM-R    ttaaGGATCCtctcttcggcttaatttccaacag		bchM-R    ttaaGGATCCtctcttcggcttaatttccaacag
-
	bchN-F    accgaattcAAGAAGGAGATATACATatggaaagggtcgaacgggaaaac		bchN-F    accgaattcAAGAAGGAGATATACATatggaaagggtcgaacgggaaaac
	bchN-R    attaggatccTCATTCCAGCCACCCCGCTT		bchN-R    attaggatccTCATTCCAGCCACCCCGCTT

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Revision as of 05:48, 27 October 2007

Contents 1 Materials 2 Methods 3 Results 4 Discussion

Materials

Methods

Primer Design

Biobricking of bch-gene cluster and crtN gene.

Gene:

bchB

bchE

bchI

bchL

bchM

bchN

[[crtNgene]]

crtN

PCR of crtN on Heliobacillus mobilis G/C content on annealing region

crtN-F 40% BglII CrtN-R 50% BamHI and XhoI

Primers

crtN-F     5’gctagCTCGAGttaGGATCCtcagtaactggctgacaagcct3’
crtN-R     3’ccaaaAGATCTgtgaaacatacagcaaaaaacctgggt5’
bchB-F     5'ttaaGAATTCaagaaggagatatacatATGGGCGGAAGCGGGGTGGCTGGA
bchB-R     3'ttaGGATCCccgttcgccttggtttgacttact5'
bchE-F     ccaaagatctAAGAAGGAGATATACATatgcgcatactgatgatcca 
bchE-R     gctagCTCGAGtattttcatcatgcctctcgt
bchI-F     ttaaGAATTCaagaaggagatatacatATGACGGAAGTGCAAAACAAT
bchI-R     ttaGGATCCtcggggctgagaaggcgggagca
bchL-F     ttaaGAATTCaagaaggagatatacatATGATCATCGCGGTCTACGGA   
bchL-R     ttaGGATCCttgggcagaaggtgtggaagca
bchM-F     ttaaGAATTCaagaaggagatatacatATGGCAAACGAAGTAAATTC
bchM-R     ttaaGGATCCtctcttcggcttaatttccaacag
bchN-F     accgaattcAAGAAGGAGATATACATatggaaagggtcgaacgggaaaac
bchN-R     attaggatccTCATTCCAGCCACCCCGCTT

PCR

  PCR of bch-? genes using - 20ng/ul pHM6
  1ul pHM6 
  1ul dNTP
  5ul primer mix 
  0.5ul enzyme-phusion polymerase
  32.5ul H20
  50ul total
   

Digestions

  6 ul bch insert
  8ul pET29bEBBX
  2ul ligase buffer
  1ul ligase 
  3ul H20
  20ul total 

Dephosphorylation

  50 ul pBR3222
  6 ul phosphatase buffer
  1 ul phosphatase
  3 ul H20
  Incubate 30" -1hr 
  run gel

Ligations (3hrs @ R.T)

Results

Sequencing

Discussion