Edinburgh/SBCode
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********** MODEL NAME | ********** MODEL NAME | ||
Model of the Division PoPer Construct of Edinburgh iGEM 2007 Team | Model of the Division PoPer Construct of Edinburgh iGEM 2007 Team | ||
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********** MODEL NOTES | ********** MODEL NOTES | ||
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The model represents the Division PoPper construct with the addition of a reporter protein placed downstream | The model represents the Division PoPper construct with the addition of a reporter protein placed downstream | ||
| + | ********** MODEL STATES | ||
| + | d/dt(YFP) = YFPexp*ForwardPhase(time)-YFPdeg*YFP | ||
| + | d/dt(GFP) = GFPexp*BackwardPhase(time)-GFPdeg*GFP | ||
| + | YFP(0) = 0 | ||
| + | GFP(0) = 0 | ||
| + | ********** MODEL PARAMETERS | ||
| + | YFPexp = 0.0001 | ||
| + | GFPexp = 0.0001 | ||
| + | GFPdeg = 0.05 | ||
| + | YFPdeg = 0.05 | ||
| + | ********** MODEL VARIABLES | ||
| + | ********** MODEL REACTIONS | ||
| + | ********** MODEL FUNCTIONS | ||
| + | ********** MODEL EVENTS | ||
| - | + | ********** MODEL MATLAB FUNCTIONS | |
| - | + | function [result] = ForwardPhase(t) | |
| - | + | FlippingTime=10; | |
| - | + | DivisionTime=40; | |
| - | + | temp=0; | |
| - | + | temp = mod(t,2*DivisionTime+2*FlippingTime); | |
| - | + | if temp < (DivisionTime) | |
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| - | ********** MODEL MATLAB FUNCTIONS | + | |
| - | function [result] = ForwardPhase(t) | + | |
| - | FlippingTime=10; | + | |
| - | DivisionTime=40; | + | |
| - | temp=0; | + | |
| - | temp = mod(t,2*DivisionTime+2*FlippingTime); | + | |
| - | if temp < (DivisionTime) | + | |
result=1; | result=1; | ||
| - | else result=0; | + | else result=0; |
| - | end | + | end |
| - | return | + | return |
| - | function [result] = BackwardPhase(t) | + | function [result] = BackwardPhase(t) |
| - | FlippingTime=10; | + | FlippingTime=10; |
| - | DivisionTime=40; | + | DivisionTime=40; |
| - | temp=0; | + | temp=0; |
| - | temp = mod(t,2*DivisionTime+2*FlippingTime); | + | temp = mod(t,2*DivisionTime+2*FlippingTime); |
| - | if temp > (DivisionTime+FlippingTime) | + | if temp > (DivisionTime+FlippingTime) |
if temp < (2*DivisionTime+FlippingTime) | if temp < (2*DivisionTime+FlippingTime) | ||
result=1; | result=1; | ||
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end | end | ||
else result=0; | else result=0; | ||
| - | end | + | end |
| - | return | + | return |
Revision as of 14:18, 24 October 2007
********** MODEL NAME Model of the Division PoPer Construct of Edinburgh iGEM 2007 Team ********** MODEL NOTES The model represents the Division PoPper construct with the addition of a reporter protein placed downstream ********** MODEL STATES d/dt(YFP) = YFPexp*ForwardPhase(time)-YFPdeg*YFP d/dt(GFP) = GFPexp*BackwardPhase(time)-GFPdeg*GFP YFP(0) = 0 GFP(0) = 0 ********** MODEL PARAMETERS YFPexp = 0.0001 GFPexp = 0.0001 GFPdeg = 0.05 YFPdeg = 0.05 ********** MODEL VARIABLES ********** MODEL REACTIONS ********** MODEL FUNCTIONS ********** MODEL EVENTS
********** MODEL MATLAB FUNCTIONS
function [result] = ForwardPhase(t)
FlippingTime=10;
DivisionTime=40;
temp=0;
temp = mod(t,2*DivisionTime+2*FlippingTime);
if temp < (DivisionTime)
result=1;
else result=0;
end
return
function [result] = BackwardPhase(t)
FlippingTime=10;
DivisionTime=40;
temp=0;
temp = mod(t,2*DivisionTime+2*FlippingTime);
if temp > (DivisionTime+FlippingTime)
if temp < (2*DivisionTime+FlippingTime)
result=1;
else result=0;
end
else result=0;
end
return
