Glasgow/DryReferences

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References
References
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[1] A. Smirnova, C. Dian, G. A. Leonard, S. McSweeney, D. Birse, and P. Brzezinski. Development
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[1] Gordon A. Leonard Sen McSweeney Darcy Birse Irina A. Smirnova,
-
of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional
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Cyril Dian and Peter Brzezinski. Development of a bacterial biosensor
-
regulator dntr. J. Mol. Biol, 340:405–418, 2004.
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for nitrotoluenes: The crystal structure of the transcriptional regulator
 +
dntr. Journal of Molecular Biology, 340:405–418, 2004.
 +
 
 +
[2] Park CH Yang CH Jung KC, Rhee HS. Determination of the dissociation
 +
constants for recombinant c-myc, max, and dna complexes: the inhibitory
 +
effect of linoleic acid on the dna-binding step. Biochem Biophys Res
 +
Commun, 334(1):269–75, 2005.
[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator
[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator
Line 23: Line 29:
cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.
cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.
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[3] F. Lacroute and GS. Stent. Peptide chain growth of -galactosidase in escherichia coli. J
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[3] Koch AL Nath K. Protein degradation in escherichia coli. i. measurement
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Mol Biol., 35:165–173, 1968.
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of rapidly and slowly decaying components. J Biol Chem, 245(11):2889–
 +
900, 1970.
 +
 
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[4] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick,
 +
Krzysztof J. Reszka, Gerene M. Denning, and Bradley E. Britigan. Subcellular
 +
localization of Pseudomonas pyocyanin cytotoxicity in human
 +
lung epithelial cells. Am J Physiol Lung Cell Mol Physiol, 284(2):L420–
 +
430, 2003.
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[4] Kyung Chae Jung, Ho Sung Rhee, Chi Hoon Park, and Yang Chul-Hak. Determination
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[5] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and
-
of the dissocation constants for recombinant c-myc. max. dna complexes: The inhibitory
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J. Ladner. Structural and functional analysis of the pyocyanin biosynthetic
-
effect of linoleic acid on the dna-bindingstep. Biochem. Biophys. Res. Commun., 334:269–
+
protein phzm from pseudomonas aeruginosa. Biochemistry, 2007.
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275, 2005.
+
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[5] Kamalendu Nath and Arthur L. Koch. Protein degradation in escherichia coli. i. measurement
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[6] Winans SC Zhu J. Autoinducer binding by the quorum-sensing regulator
-
of rapidly and slowly decaying components. J. Biol. Chem., 245:2889–2900, 1970.
+
trar increases affinity for target promoters in vitro and decreases trar
 +
turnover rates in whole cells. Proc Natl Acad Sci U S A, 96(9):4832–7,
 +
1999.
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[6] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and J. Ladner. Structural
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[7] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007.  
-
and functional analysis of the pyocyanin biosynthetic protein phzm from pseudomonas
+
-
aeruginosa. Biochemistry, 2007.
+
-
[7] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick, Krzysztof J. Reszka,
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[8] D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
-
Gerene M. Denning, and Bradley E. Britigan. Subcellular localization of Pseudomonas
+
The Journal of Physical Chemistry, 81(25):2340–2361, 1977.  
-
pyocyanin cytotoxicity in human lung epithelial cells. Am J Physiol Lung Cell Mol Physiol,
+
-
284(2):L420–430, 2003.
+
-
[8] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007. <br/>
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[9] D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New
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D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions.
+
-
The Journal of Physical Chemistry, 81(25):2340–2361, 1977. <br/>
+
-
D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New
+
York, 1st Edition, 2006.
York, 1st Edition, 2006.
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References

[1] Gordon A. Leonard Sen McSweeney Darcy Birse Irina A. Smirnova, Cyril Dian and Peter Brzezinski. Development of a bacterial biosensor for nitrotoluenes: The crystal structure of the transcriptional regulator dntr. Journal of Molecular Biology, 340:405–418, 2004.

[2] Park CH Yang CH Jung KC, Rhee HS. Determination of the dissociation constants for recombinant c-myc, max, and dna complexes: the inhibitory effect of linoleic acid on the dna-binding step. Biochem Biophys Res Commun, 334(1):269–75, 2005.

[2] Jun Zhu and Stephen C. Winans. Autoinducer binding by the quorum-sensing regulator trar increases affinity for target promoters vitro and decreases trar turnover rates in whole cells. In Proc. Natl. Acad. Sci, pages 4832–4837, 1999.

[3] Koch AL Nath K. Protein degradation in escherichia coli. i. measurement of rapidly and slowly decaying components. J Biol Chem, 245(11):2889– 900, 1970.

[4] Yunxia Q. O’Malley, Maher Y. Abdalla, Michael L. McCormick, Krzysztof J. Reszka, Gerene M. Denning, and Bradley E. Britigan. Subcellular localization of Pseudomonas pyocyanin cytotoxicity in human lung epithelial cells. Am J Physiol Lung Cell Mol Physiol, 284(2):L420– 430, 2003.

[5] J. Parsons, B. Greenhagen, K. Shi, K. Calabrese, H. Robinson, and J. Ladner. Structural and functional analysis of the pyocyanin biosynthetic protein phzm from pseudomonas aeruginosa. Biochemistry, 2007.

[6] Winans SC Zhu J. Autoinducer binding by the quorum-sensing regulator trar increases affinity for target promoters in vitro and decreases trar turnover rates in whole cells. Proc Natl Acad Sci U S A, 96(9):4832–7, 1999.

[7] David Gilbert, Monika Heiner and Sebastian Lehrack "A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets". In proceedings Computational Methods in Systems Biology CMSB 2007, Springer-Verlag LNCS/LNBI Volume 4695, pp. 200-216., 2007.

[8] D.T. Gillespie. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81(25):2340–2361, 1977.

[9] D.J. Wilkinson. Stochastic Modelling for System Biology. CRC Press, New York, 1st Edition, 2006.

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