Glasgow/Wetlab/Week9

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=== Wednesday 29th August 2007 ===
=== Wednesday 29th August 2007 ===
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[[User:Scott.w.ramsay|Scott]] did colony PCR (see [[Glasgow/Wetlab/Protocols#Protocol 9: PCR|protocol 9]]) on the assembly transformations carried out yesterday using primers VF2 and VR. Unfortunately it looks as though the combined product is larger than the sum of its parts...
[[User:Scott.w.ramsay|Scott]] did colony PCR (see [[Glasgow/Wetlab/Protocols#Protocol 9: PCR|protocol 9]]) on the assembly transformations carried out yesterday using primers VF2 and VR. Unfortunately it looks as though the combined product is larger than the sum of its parts...
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[[User:Scott.w.ramsay|Scott]] also did the following restriction digests (see [[Glasgow/Wetlab/Protocols#Protocol 7: Restriction Digests|Protocol 7]]):
[[User:Scott.w.ramsay|Scott]] also did the following restriction digests (see [[Glasgow/Wetlab/Protocols#Protocol 7: Restriction Digests|Protocol 7]]):
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=== Thursday 30th August 2007 ===
=== Thursday 30th August 2007 ===

Revision as of 17:48, 30 August 2007

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Contents

Week 9

Monday 27th August 2007

  1. Maija performed a PvuI digest for pDntA+3/20G and pDntA+4/6B constructs with Roche's PvuI enzyme. The bands were weird sizes, see the gel here.
    Insert Vector Enzyme Expected size Result
    pDntA 3/20G PvuI 1450bp + 749bp ~2500bp
    pDntA 4/6B PvuI 2375bp + 681bp ~3800bp + ~1250bp
  2. Christine digested minipreps of interest B, C and D suspected to contain (*d→g*) from 24/08/07 with PstI. Miniprep of colony D shows bands of expeceted sizes 1155bp, 549bp, ~1962bp, and 3682bp.
  3. Overnights were also set up of colonies K, L, M, N, Q, S and T, each suspected of containing (*a→d*), from plate 2.

    Tuesday 28 August 2007

    1. Lynsey, Maia and Christine did minipreps of overnights of colonies H, I, J, K, L, M, N, O, P, Q, R, S, T, U and V from Plate 2. Christine then ran a gel of the minipreps and K, L, M, N, Q, S and T showed bands interest of ~6.7kb.
    2. Christine digested all minipreps of interest for (*a→d*) and miniprep D of (*d→g*) with EcoRI. However, none showed bands of interest - possibly a fault of the enzyme, new EcoRI ordered.
      Insert (*a→d*) (*d→g*)
      Enzyme EcoRI EcoRI
      Fragments If 5'-3' 928bp, 2227bp, 18bp, 3654bp 2997bp, 18bp, 3654bp, 679bp
      Fragments If 3'-5' 928bp, 5597bp, 18bp, 284bp 679bp, 284bp, 18bp, 7046bp

      Wednesday 29th August 2007

      1. Scott did colony PCR (see protocol 9) on the assembly transformations carried out yesterday using primers VF2 and VR. Unfortunately it looks as though the combined product is larger than the sum of its parts...
      2. Scott also did the following restriction digests (see Protocol 7):
        Insert Digest 1 (EcoRI/PvuI) Insert Digest 2 (EcoRI/SpeI)
        (Done overnight at 16°C)
        J23119 (tube 1) J61101
        J23119 (tube 2) "


        Destination (EcoRI/XbaI)
        (Done overnight at 16°C)
        J61101


      3. Thursday 30th August 2007

        Friday 31st August 2007

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