July 3

From 2007.igem.org

(Difference between revisions)
(Analysis)
(Analysis)
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* We obtained the following scatter plots (mean log) for the equivalence curves:
* We obtained the following scatter plots (mean log) for the equivalence curves:
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!pL.luxR.YFP
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|[[Image:pTluxIC_0703_yfp.png|center|thumb|300px|mean YFP vs IPTG conc.]]
|[[Image:pTluxIC_0703_yfp.png|center|thumb|300px|mean YFP vs IPTG conc.]]
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|colspan="2" align="center"|<font color="Red">'''Scatter plot:'''</font> Each dot here represents the fluorescence value of an individual cell. The Cyan dots represent the fluorescence values of wild-strain K12z1 cells.
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|colspan="2" align="justify"|<font color="Red">'''Scatter plot:'''</font> Each dot here represents the fluorescence value of an individual cell. The Cyan dots represent the fluorescence values of wild-strain K12z1 cells.
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|}
== Inference ==
== Inference ==

Revision as of 05:05, 9 July 2007

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Experiments

  • Open loop experiment [E]

i) Cells were transferred to 50 mL Glu M9 in 250 mL flask with [aTc]=50 ng/mL and inoculum=1,0.1 uL/mL.

ii) pL.LuxR.Y.pR.C and K12Z1 were inoculated in LB.

iii) K12z1 was inoculated in Glu M9 and atc (1000)

iv) The contents of the flask with required OD (50 ng/mL) were filtered.

v) Seven dilutions for pL.LuxR.Y.pR.C were made with 50 old:50 new 2xM9 along with -ve control: K12z1

  • The following -ve controls were also done :

i) pL.LuxR.Y.pR.C with K12Z1 grown medium,500 uM IPTG.

ii) pL.LuxR.Y.pR.C with new M9,500 uM IPTG.

  • Open loop experiment [F]

i) Cells were transferred to 50 mL Glu M9 in 250 mL flask with [aTc]=0 ng/mL and inoculum=1,0.1 uL/mL

ii) pL.LuxR.Y.pR.C, K12Z1 and pL.YFP were inoculated in LB

iii) The contents of the flask with required OD ( ) were filtered.


Microscopy

  • pT.LuxI.C imaging was done as part of the equivalence expt.
  • pL.LuxR.Y imaging was done as part of the eqiuvalence expt.



Analysis

  • We obtained the following scatter plots (mean log) for the equivalence curves:
pL.luxR.YFP pT.luxI.CFP
mean CFP vs IPTG conc.
mean CFP vs IPTG conc.
mean YFP vs IPTG conc.
mean YFP vs IPTG conc.
Scatter plot: Each dot here represents the fluorescence value of an individual cell. The Cyan dots represent the fluorescence values of wild-strain K12z1 cells.

Inference