Princeton/lab/simulation
From 2007.igem.org
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A version of the [http://opnsrcbio.molsci.org/stochastirator/ Stochastirator], an open source ([http://www.gnu.org/licenses/old-licenses/gpl-2.0.html GPL version 2]) stochastic simulation program, modified by [http://weisswebserver.ee.princeton.edu/ Weiss lab], driven by [http://www.mathworks.com/ Mathworks] Matlab is used to model the state of our systems. | A version of the [http://opnsrcbio.molsci.org/stochastirator/ Stochastirator], an open source ([http://www.gnu.org/licenses/old-licenses/gpl-2.0.html GPL version 2]) stochastic simulation program, modified by [http://weisswebserver.ee.princeton.edu/ Weiss lab], driven by [http://www.mathworks.com/ Mathworks] Matlab is used to model the state of our systems. | ||
| - | The corresponding source code, brief tutorial for use on our internal systems, and recent code snapshot is provided as an [http://weisswebserver.ee.princeton.edu/igem/2007/p/ | + | The corresponding source code, brief tutorial for use on our internal systems, and recent code snapshot is provided as an [http://weisswebserver.ee.princeton.edu/igem/2007/p/stoch_snapshot.zip archive], for reference. Although the core [http://opnsrcbio.molsci.org/stochastirator/ Stochastirator] code is licensed under [http://www.gnu.org/licenses/old-licenses/gpl-2.0.html GPL version 2], the additional interface is provided for reference purposes. |
The figures corresponding to a [[Princeton/overview#Basic_circuit | basic version]] of our system are given below. | The figures corresponding to a [[Princeton/overview#Basic_circuit | basic version]] of our system are given below. | ||
Revision as of 15:41, 25 October 2007
Simulation
A version of the Stochastirator, an open source (GPL version 2) stochastic simulation program, modified by Weiss lab, driven by Mathworks Matlab is used to model the state of our systems.
The corresponding source code, brief tutorial for use on our internal systems, and recent code snapshot is provided as an archive, for reference. Although the core Stochastirator code is licensed under GPL version 2, the additional interface is provided for reference purposes.
The figures corresponding to a basic version of our system are given below.
Figure 1. image: State variation with time for a normal cell with the basic version of our system.
Figure 2. image: State variation with time for a cancerous (MCF-7) cell with the basic version of our system. Note difference in vertical scaling.
