Template:BerkiGEM2007 SamanthaSequencingFiles

(Difference between revisions)

Revision as of 21:49, 20 July 2007

Sample	Date (2007)	Plasmid	Clone	Primer	Result	File Link
SIL001	6-6	pBca1101-I716201	1	ca998	wrong, nonsense	SIL001
SIL002	6-6	pBca1101-I716202	1	ca998	wrong	SIL002
SIL003	6-6	pBca1101-I716202	2	ca998	wrong	SIL003
SIL004	6-6	pBca1101-I716203	1	ca998	wrong	SIL004
SIL005	6-6	pBca1101-I716203	2	ca998	wrong	SIL005
SIL006	6-6	pBca9145-I716204	1	ca998	perfect	SIL006
SIL007	6-6	pBca9145-I716204	2	ca998	perfect	SIL007
SIL008	6-6	pBca9145-I716205	1	ca998	good	SIL008
SIL009	6-6	pBca9145-I716205	2	ca998	wrong, no terminator	SIL009
SIL010	6-6	pBca9145-I716206	1	ca998	perfect	SIL010
SIL011	6-6	pBca9145-I716206	2	ca998	perfect	SIL011
SIL012	6-8	pBca9145-I716207	1	ca998	perfect	SIL012
SIL013	6-8	pBca9145-I716207	2	ca998	good	SIL013
SIL014	6-8	pBca9145-I716208	1	ca998	perfect	SIL014
SIL015	6-8	pBca9145-I716208	2	ca998	wrong, [lox] only	SIL015
SIL016	6-9	pBca9145-I716209	1	ca998	good but not long enough	SIL016
SIL017	6-9	pBca9145-I716209	2	ca998	good but not long enough	SIL017
SIL018	6-9	pBca9145-I716210	1	ca998	good	SIL018
SIL019	6-9	pBca9145-I716210	2	ca998	perfect	SIL019
SIL020	6-9	pBca9145-I716211	1	ca998	good but not long enough	SIL020
SIL021	6-9	pBca9145-I716211	2	ca998	good but not long enough	SIL021
SIL022	6-9	pBca9145-I716212	1	ca998	nope, still ATG start codon	SIL022
SIL023	6-9	pBca9145-I716212	2	ca998	nope, still ATG start codon	SIL023
SIL024	6-9	pBca9145-I716213	1	ca998	good but not long enough	SIL024
SIL025	6-9	pBca9145-I716213	2	ca998	good but not long enough	SIL025

SIL026	6-11	pBca9145-I716209	1	G01001	perfect	SIL026
SIL027	6-11	pBca9145-I716209	2	G01001	perfect	SIL027
SIL028	6-11	pBca9145-I716211	1	G01001	perfect	SIL028
SIL029	6-11	pBca9145-I716211	2	G01001	1bp deletion	SIL029
SIL030	6-11	pBca9145-I716213	2	G01001	perfect	SIL030
SIL031	6-12	pBca9145-I716214	1	ca998	bad read	SIL031
SIL032	6-12	pBca9145-I716214	2	ca998	good	SIL032
SIL033	6-12	pBca9145-I716215	1	ca998	bad read	SIL033
SIL034	6-12	pBca9145-I716215	2	ca998	good	SIL034
SIL035	6-13	pBca9145-I716212	1	ca998	bad read	SIL035
SIL036	6-13	pBca9145-I716212	2	ca998	wrong - still ATG start	SIL036
SIL037	6-15	pBca9145-I716216	1	ca998	wrong - cassette only	SIL037
SIL038	6-15	pBca9145-I716220	1	ca998	perfect	SIL038
SIL039	6-15	pBca9145-I716221	1	ca998	perfect	SIL039
SIL040	6-15	pBca9145-I716222	1	ca998	perfect	SIL040
SIL041	6-15	pBca9145-I716223	1	ca998	wrong - missing cassette	SIL041
SIL042	6-19	pBca9145-I716212	1	ca998	good	SIL042
SIL043	6-19	pBca9145-I716216	2	ca998	perfect! finally!	SIL043
SIL044	6-20	pBca9145-I716216	2	ca998	bad read	SIL044
SIL045	6-20	pBca9145-I716216	3	ca998	bad read - only Cre though	SIL045
SIL046	6-20	pBca9145-I716217	1	ca998	bad read - only Cre though	SIL046
SIL047	6-20	pBca9145-I716217	2	ca998	weird - missing a lox site	SIL047
SIL048	6-20	pBca9145-I716218	1	ca998	messy but should be right	SIL048
SIL049	6-20	pBca9145-I716218	2	ca998	perfect	SIL049
SIL050	6-20	pBca9145-I716219	1	ca998	perfect	SIL050

Start 51

SIL051	6-20	pBca9145-I716219	2	ca998	perfect	SIL051
SIL052	6-20	pBca9145-I716222	2	ca998	wrong	SIL052
SIL053	6-20	pBca9145-I716222	3	ca998	perfect	SIL053
SIL054	6-20	pBca9145-I716223	1	ca998	perfect!	SIL054
SIL055	6-20	pBca9145-I716223	4	ca998	perfect	SIL055
SIL056	6-26	pBca9145-I716216	R1	ca998	no ceaB	SIL056
SIL057	6-26	pBca9145-I716217	R4	ca998	no ceaB	SIL057
SIL058	6-26	pBca9145-I716217	R5	ca998	no ceaB	SIL058
SIL059	6-26	pBca9145-I716224	1	ca998	perfect	SIL059
SIL060	6-26	pBca9145-I716225	2	ca998	perfect	SIL060
SIL061	6-26	pBca9145-I716226	3	ca998	perfect	SIL061
SIL062	7-02	pBca9145-I716216	ddbs4	ca998	possible point mutatiion	SIL062
SIL063	7-02	pBca9145-I716217	dbbs3	ca998	perfect	SIL063
SIL064	7-11	pBca9145-I716401	1	ca998	still has CamR -no pbad	SIL064
SIL065	7-11	pBca9145-I716402	1	ca998	perfect	SIL065
SIL066	7-11	pBca9145-I716403	1	ca998	perfect	SIL066
SIL067	7-11	pBca9145-I716404	1	ca998	perfect	SIL067
SIL068	7-11	pBca9145-I716405	1	ca998	perfect	SIL068
SIL069	7-11	pBca9145-I716406	1	ca998	looks good - but mixed template	SIL069
SIL070	7-11	pBca9145-I716407	1	ca998	badly mixed template	SIL070
SIL071	7-11	pBca9145-I716408	1	ca998	good	SIL071
SIL072	7-11	pBca9145-I716409	1	ca998	badly mixed template	SIL072
SIL073	7-11	pBca9145-I716410	1	ca998	still has CamR - no pBad	SIL073
SIL074	7-11	pBca9145-I716411	1	ca998	perfect	SIL074
SIL075	7-11	pBca9145-I716412	1	ca998	perfect	SIL075

Start 76

SIL076	7-11	pBca9145-I716413	1	ca998	good	SIL076
SIL077	7-11	pBca9145-I716414	1	ca998	good	SIL077
SIL078	7-11	pBca9145-I716415	1	ca998	looks good, but a little mixed read	SIL078
SIL079	7-17	pBca9145-I716401	2	ca998	perfect	SIL079
SIL080	7-17	pBca9145-I716407	2	ca998	perfect	SIL080
SIL081	7-17	pBca9145-I716409	2	ca998	mixed-can see part of pbad	SIL081
SIL082	7-17	pBca9145-I716410	2	ca998	perfect	SIL082
SIL083	7-17	pBca9145-I716416	1	ca998	???	SIL083
SIL084	7-17	pBca9145-I716417	1	ca998	???	SIL084
SIL085	7-17	pBca9145-I716418	1	ca998	???	SIL085
SIL086	7-17	pBca9145-I716419	1	ca998	???	SIL086
SIL087	7-17	pBca9145-I716420	1	ca998	???	SIL087
SIL088	7-17	pBca9145-I716421	1	ca998	???	SIL088
SIL089	7-17	pBca9145-I716422	1	ca998	???	SIL089
SIL090	7-17	pBca9145-I716422	4	ca998	???	SIL090
SIL091	7-17	pBca9145-I716423	1	ca998	???	SIL091
SIL092	7-17	pBca9145-I716423	3	ca998	???	SIL092
SIL093	7-20	pBca9145-I716408C	1	ca998	???	SIL093
SIL094	7-20	pBca9145-I716408E	1	ca998	???	SIL094
SIL095	7-20	pBca9145-I716408C	1	G01001	???	SIL095
SIL096	7-20	pBca9145-I716408E	1	G01001	???	SIL096
SIL097	7-20	pBca9145-I716411B	PCR	ca998	???	SIL097
SIL098	7-20	pBca9145-I716411B	PCR	G01001	???	SIL098
SIL099	???	???	???	???	???	SIL099
SIL100	???	???	???	???	???	SIL100

@@ Line 170: / Line 170: @@
 |SIL078||7-11||pBca9145-I716415||1||ca998||looks good, but a little mixed read||[[BerkiGEM2007-Sequencing-SIL078 | SIL078]]
 |-
-|SIL079||7-17||pBca9145-I716401||2||ca998||???||[[BerkiGEM2007-Sequencing-SIL079 | SIL079]]
+|SIL079||7-17||pBca9145-I716401||2||ca998||perfect||[[BerkiGEM2007-Sequencing-SIL079 | SIL079]]
 |-
-|SIL080||7-17||pBca9145-I716407||2||ca998||???||[[BerkiGEM2007-Sequencing-SIL080 | SIL080]]
+|SIL080||7-17||pBca9145-I716407||2||ca998||perfect||[[BerkiGEM2007-Sequencing-SIL080 | SIL080]]
 |-
-|SIL081||7-17||pBca9145-I716409||2||ca998||???||[[BerkiGEM2007-Sequencing-SIL081 | SIL081]]
+|SIL081||7-17||pBca9145-I716409||2||ca998||mixed-can see part of pbad||[[BerkiGEM2007-Sequencing-SIL081 | SIL081]]
 |-
-|SIL082||7-17||pBca9145-I716410||2||ca998||???||[[BerkiGEM2007-Sequencing-SIL082 | SIL082]]
+|SIL082||7-17||pBca9145-I716410||2||ca998||perfect||[[BerkiGEM2007-Sequencing-SIL082 | SIL082]]
 |-
 |SIL083||7-17||pBca9145-I716416||1||ca998||???||[[BerkiGEM2007-Sequencing-SIL083 | SIL083]]