Template:BerkiGEM2007 SamanthaSequencingFiles
From 2007.igem.org
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|SIL106||7-31||Bca9145-I716441||2||ca56||perfect||[[BerkiGEM2007-Sequencing-SIL106 | SIL106]] | |SIL106||7-31||Bca9145-I716441||2||ca56||perfect||[[BerkiGEM2007-Sequencing-SIL106 | SIL106]] | ||
|- | |- | ||
| - | |SIL107||8-3||Bca1101-I716438||1||ca998|| | + | |SIL107||8-3||Bca1101-I716438||1||ca998||good-needs reverse||[[BerkiGEM2007-Sequencing-SIL107 | SIL107]] |
|- | |- | ||
| - | |SIL108||8-3||Bca1101-I716438||4||ca998|| | + | |SIL108||8-3||Bca1101-I716438||4||ca998||good-needs reverse||[[BerkiGEM2007-Sequencing-SIL108 | SIL108]] |
|- | |- | ||
| - | |SIL109||8-3||Bca9145-I716439||1||ca998|| | + | |SIL109||8-3||Bca9145-I716439||1||ca998||good-needs reverse||[[BerkiGEM2007-Sequencing-SIL109 | SIL109]] |
|- | |- | ||
| - | |SIL110||8-3||Bca9145-I716439||3||ca998|| | + | |SIL110||8-3||Bca9145-I716439||3||ca998||good-needs reverse||[[BerkiGEM2007-Sequencing-SIL110 | SIL110]] |
|- | |- | ||
| - | |SIL111||8-3||Bca9145-I716442||2||ca56|| | + | |SIL111||8-3||Bca9145-I716442||2||ca56||perfect||[[BerkiGEM2007-Sequencing-SIL111 | SIL111]] |
|- | |- | ||
| - | |SIL112||8-3||Bca9145-I716442||3||ca56|| | + | |SIL112||8-3||Bca9145-I716442||3||ca56||perfect||[[BerkiGEM2007-Sequencing-SIL112 | SIL112]] |
|- | |- | ||
|SIL113||???||???||???||???||???||[[BerkiGEM2007-Sequencing-SIL113 | SIL113]] | |SIL113||???||???||???||???||???||[[BerkiGEM2007-Sequencing-SIL113 | SIL113]] | ||
Revision as of 01:13, 7 August 2007
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL001 | 6-6 | pBca1101-I716201 | 1 | ca998 | wrong, nonsense | SIL001 |
| SIL002 | 6-6 | pBca1101-I716202 | 1 | ca998 | wrong | SIL002 |
| SIL003 | 6-6 | pBca1101-I716202 | 2 | ca998 | wrong | SIL003 |
| SIL004 | 6-6 | pBca1101-I716203 | 1 | ca998 | wrong | SIL004 |
| SIL005 | 6-6 | pBca1101-I716203 | 2 | ca998 | wrong | SIL005 |
| SIL006 | 6-6 | pBca9145-I716204 | 1 | ca998 | perfect | SIL006 |
| SIL007 | 6-6 | pBca9145-I716204 | 2 | ca998 | perfect | SIL007 |
| SIL008 | 6-6 | pBca9145-I716205 | 1 | ca998 | good | SIL008 |
| SIL009 | 6-6 | pBca9145-I716205 | 2 | ca998 | wrong, no terminator | SIL009 |
| SIL010 | 6-6 | pBca9145-I716206 | 1 | ca998 | perfect | SIL010 |
| SIL011 | 6-6 | pBca9145-I716206 | 2 | ca998 | perfect | SIL011 |
| SIL012 | 6-8 | pBca9145-I716207 | 1 | ca998 | perfect | SIL012 |
| SIL013 | 6-8 | pBca9145-I716207 | 2 | ca998 | good | SIL013 |
| SIL014 | 6-8 | pBca9145-I716208 | 1 | ca998 | perfect | SIL014 |
| SIL015 | 6-8 | pBca9145-I716208 | 2 | ca998 | wrong, [lox] only | SIL015 |
| SIL016 | 6-9 | pBca9145-I716209 | 1 | ca998 | good but not long enough | SIL016 |
| SIL017 | 6-9 | pBca9145-I716209 | 2 | ca998 | good but not long enough | SIL017 |
| SIL018 | 6-9 | pBca9145-I716210 | 1 | ca998 | good | SIL018 |
| SIL019 | 6-9 | pBca9145-I716210 | 2 | ca998 | perfect | SIL019 |
| SIL020 | 6-9 | pBca9145-I716211 | 1 | ca998 | good but not long enough | SIL020 |
| SIL021 | 6-9 | pBca9145-I716211 | 2 | ca998 | good but not long enough | SIL021 |
| SIL022 | 6-9 | pBca9145-I716212 | 1 | ca998 | nope, still ATG start codon | SIL022 |
| SIL023 | 6-9 | pBca9145-I716212 | 2 | ca998 | nope, still ATG start codon | SIL023 |
| SIL024 | 6-9 | pBca9145-I716213 | 1 | ca998 | good but not long enough | SIL024 |
| SIL025 | 6-9 | pBca9145-I716213 | 2 | ca998 | good but not long enough | SIL025 |
Contents |
Start 26
| SIL026 | 6-11 | pBca9145-I716209 | 1 | G01001 | perfect | SIL026 |
| SIL027 | 6-11 | pBca9145-I716209 | 2 | G01001 | perfect | SIL027 |
| SIL028 | 6-11 | pBca9145-I716211 | 1 | G01001 | perfect | SIL028 |
| SIL029 | 6-11 | pBca9145-I716211 | 2 | G01001 | 1bp deletion | SIL029 |
| SIL030 | 6-11 | pBca9145-I716213 | 2 | G01001 | perfect | SIL030 |
| SIL031 | 6-12 | pBca9145-I716214 | 1 | ca998 | bad read | SIL031 |
| SIL032 | 6-12 | pBca9145-I716214 | 2 | ca998 | good | SIL032 |
| SIL033 | 6-12 | pBca9145-I716215 | 1 | ca998 | bad read | SIL033 |
| SIL034 | 6-12 | pBca9145-I716215 | 2 | ca998 | good | SIL034 |
| SIL035 | 6-13 | pBca9145-I716212 | 1 | ca998 | bad read | SIL035 |
| SIL036 | 6-13 | pBca9145-I716212 | 2 | ca998 | wrong - still ATG start | SIL036 |
| SIL037 | 6-15 | pBca9145-I716216 | 1 | ca998 | wrong - cassette only | SIL037 |
| SIL038 | 6-15 | pBca9145-I716220 | 1 | ca998 | perfect | SIL038 |
| SIL039 | 6-15 | pBca9145-I716221 | 1 | ca998 | perfect | SIL039 |
| SIL040 | 6-15 | pBca9145-I716222 | 1 | ca998 | perfect | SIL040 |
| SIL041 | 6-15 | pBca9145-I716223 | 1 | ca998 | wrong - missing cassette | SIL041 |
| SIL042 | 6-19 | pBca9145-I716212 | 1 | ca998 | good | SIL042 |
| SIL043 | 6-19 | pBca9145-I716216 | 2 | ca998 | perfect! finally! | SIL043 |
| SIL044 | 6-20 | pBca9145-I716216 | 2 | ca998 | bad read | SIL044 |
| SIL045 | 6-20 | pBca9145-I716216 | 3 | ca998 | bad read - only Cre though | SIL045 |
| SIL046 | 6-20 | pBca9145-I716217 | 1 | ca998 | bad read - only Cre though | SIL046 |
| SIL047 | 6-20 | pBca9145-I716217 | 2 | ca998 | weird - missing a lox site | SIL047 |
| SIL048 | 6-20 | pBca9145-I716218 | 1 | ca998 | messy but should be right | SIL048 |
| SIL049 | 6-20 | pBca9145-I716218 | 2 | ca998 | perfect | SIL049 |
| SIL050 | 6-20 | pBca9145-I716219 | 1 | ca998 | perfect | SIL050 |
Start 51
| SIL051 | 6-20 | pBca9145-I716219 | 2 | ca998 | perfect | SIL051 |
| SIL052 | 6-20 | pBca9145-I716222 | 2 | ca998 | wrong | SIL052 |
| SIL053 | 6-20 | pBca9145-I716222 | 3 | ca998 | perfect | SIL053 |
| SIL054 | 6-20 | pBca9145-I716223 | 1 | ca998 | perfect! | SIL054 |
| SIL055 | 6-20 | pBca9145-I716223 | 4 | ca998 | perfect | SIL055 |
| SIL056 | 6-26 | pBca9145-I716216 | R1 | ca998 | no ceaB | SIL056 |
| SIL057 | 6-26 | pBca9145-I716217 | R4 | ca998 | no ceaB | SIL057 |
| SIL058 | 6-26 | pBca9145-I716217 | R5 | ca998 | no ceaB | SIL058 |
| SIL059 | 6-26 | pBca9145-I716224 | 1 | ca998 | perfect | SIL059 |
| SIL060 | 6-26 | pBca9145-I716225 | 2 | ca998 | perfect | SIL060 |
| SIL061 | 6-26 | pBca9145-I716226 | 3 | ca998 | perfect | SIL061 |
| SIL062 | 7-02 | pBca9145-I716216 | ddbs4 | ca998 | possible point mutatiion | SIL062 |
| SIL063 | 7-02 | pBca9145-I716217 | dbbs3 | ca998 | perfect | SIL063 |
| SIL064 | 7-11 | pBca9145-I716401 | 1 | ca998 | still has CamR -no pbad | SIL064 |
| SIL065 | 7-11 | pBca9145-I716402 | 1 | ca998 | perfect | SIL065 |
| SIL066 | 7-11 | pBca9145-I716403 | 1 | ca998 | perfect | SIL066 |
| SIL067 | 7-11 | pBca9145-I716404 | 1 | ca998 | perfect | SIL067 |
| SIL068 | 7-11 | pBca9145-I716405 | 1 | ca998 | perfect | SIL068 |
| SIL069 | 7-11 | pBca9145-I716406 | 1 | ca998 | looks good - but mixed template | SIL069 |
| SIL070 | 7-11 | pBca9145-I716407 | 1 | ca998 | badly mixed template | SIL070 |
| SIL071 | 7-11 | pBca9145-I716408 | 1 | ca998 | good | SIL071 |
| SIL072 | 7-11 | pBca9145-I716409 | 1 | ca998 | badly mixed template | SIL072 |
| SIL073 | 7-11 | pBca9145-I716410 | 1 | ca998 | still has CamR - no pBad | SIL073 |
| SIL074 | 7-11 | pBca9145-I716411 | 1 | ca998 | perfect | SIL074 |
| SIL075 | 7-11 | pBca9145-I716412 | 1 | ca998 | perfect | SIL075 |
Start 76
| SIL076 | 7-11 | pBca9145-I716413 | 1 | ca998 | good | SIL076 |
| SIL077 | 7-11 | pBca9145-I716414 | 1 | ca998 | good | SIL077 |
| SIL078 | 7-11 | pBca9145-I716415 | 1 | ca998 | looks good, but a little mixed read | SIL078 |
| SIL079 | 7-17 | pBca9145-I716401 | 2 | ca998 | perfect | SIL079 |
| SIL080 | 7-17 | pBca9145-I716407 | 2 | ca998 | perfect | SIL080 |
| SIL081 | 7-17 | pBca9145-I716409 | 2 | ca998 | mixed-can see part of pbad | SIL081 |
| SIL082 | 7-17 | pBca9145-I716410 | 2 | ca998 | perfect | SIL082 |
| SIL083 | 7-17 | pBca9145-I716416 | 1 | ca998 | CamR instead of pbad | SIL083 |
| SIL084 | 7-17 | pBca9145-I716417 | 1 | ca998 | good | SIL084 |
| SIL085 | 7-17 | pBca9145-I716418 | 1 | ca998 | CamR instead of pbad | SIL085 |
| SIL086 | 7-17 | pBca9145-I716419 | 1 | ca998 | CamR instead of pbad | SIL086 |
| SIL087 | 7-17 | pBca9145-I716420 | 1 | ca998 | mixed template - no match | SIL087 |
| SIL088 | 7-17 | pBca9145-I716421 | 1 | ca998 | CamR instead of pbad | SIL088 |
| SIL089 | 7-17 | pBca9145-I716422 | 1 | ca998 | perfect | SIL089 |
| SIL090 | 7-17 | pBca9145-I716422 | 4 | ca998 | perfect | SIL090 |
| SIL091 | 7-17 | pBca9145-I716423 | 1 | ca998 | perfect | SIL091 |
| SIL092 | 7-17 | pBca9145-I716423 | 3 | ca998 | perfect | SIL092 |
| SIL093 | 7-20 | pBca9145-I716408C | 1 | ca998 | recombination | SIL093 |
| SIL094 | 7-20 | pBca9145-I716408E | 1 | ca998 | recombination | SIL094 |
| SIL095 | 7-20 | pBca9145-I716408C | 1 | G01001 | recombination | SIL095 |
| SIL096 | 7-20 | pBca9145-I716408E | 1 | G01001 | recombination | SIL096 |
| SIL097 | 7-26 | pBca1101-I716436 | 2 | ca998 | weak signal | SIL097 |
| SIL098 | 7-26 | pBca1101-I716436 | 4 | ca998 | perfect | SIL098 |
| SIL099 | 7-26 | pBca9145-I716437 | 1 | ca998 | perfect | SIL099 |
| SIL100 | 7-26 | pBca9145-I716437 | 2 | ca998 | perfect | SIL100 |
Start 101
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL101 | 7-31 | Bca1101-I716438 | 1 | ca998 | only TT | SIL101 |
| SIL102 | 7-31 | Bca9145-I716439 | 1 | ca998 | only TT | SIL102 |
| SIL103 | 7-31 | Bca9145-I716439 | 2 | ca998 | wrong | SIL103 |
| SIL104 | 7-31 | Bca9145-I716440 | 1 | ca998 | good but need G01001 too | SIL104 |
| SIL105 | 7-31 | Bca9145-I716441 | 1 | ca56 | perfect | SIL105 |
| SIL106 | 7-31 | Bca9145-I716441 | 2 | ca56 | perfect | SIL106 |
| SIL107 | 8-3 | Bca1101-I716438 | 1 | ca998 | good-needs reverse | SIL107 |
| SIL108 | 8-3 | Bca1101-I716438 | 4 | ca998 | good-needs reverse | SIL108 |
| SIL109 | 8-3 | Bca9145-I716439 | 1 | ca998 | good-needs reverse | SIL109 |
| SIL110 | 8-3 | Bca9145-I716439 | 3 | ca998 | good-needs reverse | SIL110 |
| SIL111 | 8-3 | Bca9145-I716442 | 2 | ca56 | perfect | SIL111 |
| SIL112 | 8-3 | Bca9145-I716442 | 3 | ca56 | perfect | SIL112 |
| SIL113 | ??? | ??? | ??? | ??? | ??? | SIL113 |
| SIL114 | ??? | ??? | ??? | ??? | ??? | SIL114 |
| SIL115 | ??? | ??? | ??? | ??? | ??? | SIL115 |
| SIL116 | ??? | ??? | ??? | ??? | ??? | SIL116 |
| SIL117 | ??? | ??? | ??? | ??? | ??? | SIL117 |
| SIL118 | ??? | ??? | ??? | ??? | ??? | SIL118 |
| SIL119 | ??? | ??? | ??? | ??? | ??? | SIL119 |
| SIL120 | ??? | ??? | ??? | ??? | ??? | SIL120 |
| SIL121 | ??? | ??? | ??? | ??? | ??? | SIL121 |
| SIL122 | ??? | ??? | ??? | ??? | ??? | SIL122 |
| SIL123 | ??? | ??? | ??? | ??? | ??? | SIL123 |
| SIL124 | ??? | ??? | ??? | ??? | ??? | SIL124 |
| SIL125 | ??? | ??? | ??? | ??? | ??? | SIL125 |
