From 2007.igem.org

Quantitation

1. Take the extracted DNA and run a gel to find out the concentration (per μL) of your DNA.

• 1 μL plasmid + 4 μL ddH2O + 1 μL Loading Dye

         * *      Gel Lane	Fragment
     1 	HindIII Ladder (5 μL)
     2 	HindIII Ladder (2 μL)
     3 	HindIII Ladder (1 μL)
     4 	Blank
     5 	Plasmid (All of it)
     6 	Blank
     7 	Insert (All of it)
     8 	Blank
     9 	1 Kbp Ladder (3 μL)

1. Ensure that the plasmid and inserts are at the correct lengths using the 1 Kbp ladder.
2. Note that 2 μL of HindIII will twice as bright as 1 μL of HindIII, and 5 μL of HindIII will be five times as bright. So to determine concentration, estimate the intensity of the bands compared with the 3 HindIII ladders and assign it a relative intensity factor. Read off the concentration value on the Ladder card, and multiply by the relative intensity factor to determine your sample concentration in ng/μL.

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