Week 5

From 2007.igem.org

(Difference between revisions)
Line 10: Line 10:
*There isn’t any colony for [http://partsregistry.org/Part:BBa_C0012 C0012] , so we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colony in 5 ml.
*There isn’t any colony for [http://partsregistry.org/Part:BBa_C0012 C0012] , so we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colony in 5 ml.
*We strake on plates 30/07 ligations.
*We strake on plates 30/07 ligations.
-
*We get along with the J04431 fluorescence test:
+
*We get along with the [http://partsregistry.org/Part:BBa_J04431 J04431] fluorescence test:
-From the glycerol stock we sprout 1 ml at 37°C for 1 hour in agitation.
-From the glycerol stock we sprout 1 ml at 37°C for 1 hour in agitation.
Line 22: Line 22:
::'''08/01/07'''
::'''08/01/07'''
*We get along with:
*We get along with:
-
-Miniprep of I52034 and B0015;
+
-Miniprep of [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015];
-
-Digestion of B0015 with Xba/Pst1;
+
-Digestion of [http://partsregistry.org/Part:BBa_B0015 B0015] with Xba/Pst1;
-
-Digestion of I52034 with Spe/Pst1;
+
-Digestion of [http://partsregistry.org/Part:BBa_I52034 I52034] with Spe/Pst1;
-
-Extraction from gel (we can’t see B0015);
+
-Extraction from gel (we can’t see [http://partsregistry.org/Part:BBa_B0015 B0015]);
-
-R0015+I13507 (I763007) ligation which doesn’t give colonies so we transform with the other 10 ul of ligation;  
+
-[http://partsregistry.org/Part:BBa_R0015 R0015]+[http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)] ligation which doesn’t give colonies so we transform with the other 10 ul of ligation;  
-
-J04500+C0051 (I763005) ligation which gives colonies so we inoculate in 5ml;
+
-[http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051][http://partsregistry.org/Part:BBa_I763005 (I763005)]ligation which gives colonies so we inoculate in 5ml;
-
-Transformation for C0012 (4ul) and for J22101 (2ul);
+
-Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012] (4ul) and for [http://partsregistry.org/Part:BBa_J22101 J22101] (2ul);
-
-A new R0051+ I13507 (I763007) (vector 4ul, insert 8ul) ligation.  
+
-A new [http://partsregistry.org/Part:BBa_R0051 R0051]+ [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 4ul, insert 8ul) ligation.  

Revision as of 11:44, 28 August 2007

07/30/07



07/31/07
  • There isn’t any colony for C0012 , so we inoculate I52034 and B0015 colony in 5 ml.
  • We strake on plates 30/07 ligations.
  • We get along with the J04431 fluorescence test:

-From the glycerol stock we sprout 1 ml at 37°C for 1 hour in agitation.

-We verify the OD and the fluorescence every 15 minutes. The fluorescence compare at the istance t=210min and at the OD=0.5.

  • At the end of this test we decide to repeat it to see if we can switch off the fluorescent cells with a major quantity of glucose to confirm our assumptions.

We will attend this test on 07/08.



08/01/07
  • We get along with:

-Miniprep of I52034 and B0015;

-Digestion of B0015 with Xba/Pst1;

-Digestion of I52034 with Spe/Pst1;

-Extraction from gel (we can’t see B0015);

-R0015+I13507(I763007) ligation which doesn’t give colonies so we transform with the other 10 ul of ligation;

-J04500+C0051(I763005)ligation which gives colonies so we inoculate in 5ml;

-Transformation for C0012 (4ul) and for J22101 (2ul);

-A new R0051+ I13507 (I763007) (vector 4ul, insert 8ul) ligation.



08/02/07
  • Today we do:

-Miniprep of J04500+C0051 (I763005);

-Control digestion of 5 ul with Eco/Pst1;

-A new B0015 digestion with Xba/Pst1;

-Digested run on electroforesi gel but we have problems with gel because we don’t see the band;

-Band exstraction for B0015 e I763005;

-We observe thre aren’t colonies for C0012, but there are colonies for R0051 + I13507 (I763007), so we identify the correct ligation protocol;

- R0010, P0412, C0012 transformation;

-Inoculation in 5 ml for R0051 + I13507 and for J22101;

- R0051 + I13507 (I763007) fluorescence test to verify if the filter for RFP is adapted, but it isn’t.



08/03/07
  • We get along with:

-Miniprep for J22101 and for R0051+ I13507 (I763007);

- J22101 digestion with Xba/Pst1 ;

- Control digestion of R0051 + I13507 (I763007);

- J04500+C0051 (I763005) and B0015 and J22101 and R0051 + I13507 (I763007) run on electroforesi gel and J04500+C0051 (I763005) and J22101 estraction;

-Glycerol stock preparation;



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