NYMU Taipei/Protocols2/Computational analysis

<h3>Domain Structure</h3>
<p>[[iprscan result]]</p>
<hr width="100%" size="2" />
<h3>Transmembrane Prediction</h3>
<p>[[TMHMM]]</p>
<p>[[TMpred]]</p>
<p>[[hmmtop]]</p>
<p>[[DAS TM prediction]]</p>
<p>[[Protein Prediction]]</p>
<p>[[TopPred]]</p>
<hr width="100%" size="2" />
<h3>Multiple Sequence Alignment</h3>
<p>MAFFT Alignment program</p>
<p>[[Cph1-EnvZ]]</p>
<p>[[RcsC-EnvZ]]</p>
<p>&nbsp;
<table width="200" cellspacing="1" cellpadding="1" border="1">
    <tbody>
        <tr>
            <td>Domain</td>
            <td>Color</td>
        </tr>
        <tr>
            <td>PAS</td>
            <td bgcolor="#ff0000">&nbsp;</td>
        </tr>
        <tr>
            <td>GAF</td>
            <td bgcolor="#22ff22">&nbsp;</td>
        </tr>
        <tr>
            <td>Histidine kinase</td>
            <td bgcolor="#0000ff">&nbsp;</td>
        </tr>
        <tr>
            <td>Transmembrane</td>
            <td bgcolor="#006699">&nbsp;</td>
        </tr>
        <tr>
            <td>HAMP</td>
            <td bgcolor="#ffff00">&nbsp;</td>
        </tr>
        <tr>
            <td>Response regularor</td>
            <td bgcolor="#660099">&nbsp;</td>
        </tr>
    </tbody>
</table>
</p>
<h3><hr width="100%" size="2" />
RcsC-EnvZ chimera candidate</h3>
<p>[[image:rcsc_envz_chimera.png]]</p>
<p>&nbsp;</p>
<p>&nbsp;</p>