PHO80cds

From 2007.igem.org

(Difference between revisions)
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Gene Pho80
Gene Pho80
CODING SEQUENCE
CODING SEQUENCE
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1 ATGGAAAGCA CATCAGGAGA ACGTTCCGAA AATATACATG AGGATCAAGG
1 ATGGAAAGCA CATCAGGAGA ACGTTCCGAA AATATACATG AGGATCAAGG
Line 38: Line 39:
     851  ATATCTATAA CAAGCGATCA AAGCCAGATT AA
     851  ATATCTATAA CAAGCGATCA AAGCCAGATT AA
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XbaI cuts in 2 sites
 
 +
XbaI cuts in 2 sites
•91
•91
 +
•648
•648
    
    
 +
Line 70: Line 73:
Met E S T S G E R S E N I H E D Q G I P K V I L P A D F N K C S R T D L V V L I S R Met L V S L I A I N E N S A T K K S D D Q I T L T R Y H S K I P P N I S I F N Y F I R L T K F S S L E H C V L Met T S L Y Y I D L L Q T V Y P D F T L N S L T A H R F L L T A T T V A T K G L C D S F S T N A H Y A K V G G V R C H E L N I L E N D F L K R V N Y R I I P R D H N I T L C S I E Q K Q K K F V I D K N A L G S L D L D S Y S Y V N R P K S G Y N V L D K Y Y R R I V Q L V G S F N A S P D K S R K V D Y V L P P N I D I V S E S G S Q T T Q L K G S S S P N S H S S Q K R Y S E A K D A H I Y N K R S K P D Stop  
Met E S T S G E R S E N I H E D Q G I P K V I L P A D F N K C S R T D L V V L I S R Met L V S L I A I N E N S A T K K S D D Q I T L T R Y H S K I P P N I S I F N Y F I R L T K F S S L E H C V L Met T S L Y Y I D L L Q T V Y P D F T L N S L T A H R F L L T A T T V A T K G L C D S F S T N A H Y A K V G G V R C H E L N I L E N D F L K R V N Y R I I P R D H N I T L C S I E Q K Q K K F V I D K N A L G S L D L D S Y S Y V N R P K S G Y N V L D K Y Y R R I V Q L V G S F N A S P D K S R K V D Y V L P P N I D I V S E S G S Q T T Q L K G S S S P N S H S S Q K R Y S E A K D A H I Y N K R S K P D Stop  
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Virtual Sequence: VIRT14212
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Virtual Sequence:  
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ID  VIRT14212              Unreviewed;      293 AA.
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SEQUENCE  293 AA;  33227 MW; 72918CAF845AE74C CRC64.
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AC  VIRT14212;
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DE  Translation of nucleotide sequence generated on ExPASy
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DE  on 10-Jul-2007 by 193.43.101.20.
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CC  -!- This virtual protein sequence will automatically be deleted
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CC      from the server after a few days.
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CC  9.11 PI.
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DR  SWISS-2DPAGE; VIRT14212; VIRTUAL.
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SQ  SEQUENCE  293 AA;  33227 MW; 72918CAF845AE74C CRC64.
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     MESTSGERSE NIHEDQGIPK VILPADFNKC [[SR]]TDLVVLIS RMLVSLIAIN ENSATKKSDD
     MESTSGERSE NIHEDQGIPK VILPADFNKC [[SR]]TDLVVLIS RMLVSLIAIN ENSATKKSDD
     QITLTRYHSK IPPNISIFNY FIRLTKFSSL EHCVLMTSLY YIDLLQTVYP DFTLNSLTAH
     QITLTRYHSK IPPNISIFNY FIRLTKFSSL EHCVLMTSLY YIDLLQTVYP DFTLNSLTAH
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PHO80
PHO80
Primer sequences:
Primer sequences:
 +
t93c            5'-cgctgattttaataaatgctccagaactgacctagtggtgc-3'
t93c            5'-cgctgattttaataaatgctccagaactgacctagtggtgc-3'
 +
t93c antisense  5'-gcaccactaggtcagttctggagcatttattaaaatcagcg-3'
t93c antisense  5'-gcaccactaggtcagttctggagcatttattaaaatcagcg-3'
t648c          5'-atcgtccaaaaagtggatataatgtcctagataaatactatcgaagaatag-3'
t648c          5'-atcgtccaaaaagtggatataatgtcctagataaatactatcgaagaatag-3'
 +
t648c antisense 5'-ctattcttcgatagtatttatctaggacattatatccactttttggacgat-3'
t648c antisense 5'-ctattcttcgatagtatttatctaggacattatatccactttttggacgat-3'

Revision as of 15:49, 16 October 2007

Gene Pho80 CODING SEQUENCE


1 ATGGAAAGCA CATCAGGAGA ACGTTCCGAA AATATACATG AGGATCAAGG 

     51  GATACCAAAA GTAATTCTGC CCGCTGATTT TAATAAATGC TCTAGAACTG

    101  ACCTAGTGGT GCTCATATCA CGAATGTTAG TATCGCTGAT AGCAATCAAT

    151  GAAAATTCAG CAACAAAGAA ATCTGATGAC CAAATTACTT TAACACGATA

    201  CCATTCTAAG ATTCCTCCAA ACATATCAAT CTTCAACTAT TTCATACGAC

    251  TGACAAAGTT TTCCTCTTTA GAACATTGTG TGCTTATGAC ATCACTCTAT

    301  TATATCGATT TATTGCAAAC TGTGTATCCT GATTTTACGC TTAATTCGTT

    351  GACTGCCCAT AGGTTTTTAT TAACAGCCAC CACAGTCGCA ACAAAAGGCT

    401  TATGTGATTC GTTCTCAACA AACGCCCATT ATGCAAAAGT TGGAGGAGTA

    451  CGATGTCACG AATTGAATAT ACTGGAGAAC GATTTTTTAA AGAGAGTAAA

    501  CTACAGAATC ATTCCGCGGG ATCATAACAT TACGTTATGT AGTATAGAGC
    
    551  AAAAACAGAA AAAGTTTGTC ATAGATAAAA ACGCATTAGG GTCTCTCGAT

    601  TTGGATTCTT ATTCTTACGT TAATCGTCCA AAAAGTGGAT ATAATGTTCT

    651  AGATAAATAC TATCGAAGAA TAGTTCAGCT GGTGGGTTCC TTTAACGCTT

    701  CACCTGATAA GAGTAGAAAG GTTGATTATG TTCTCCCGCC AAATATTGAT

    751  ATAGTGAGTG AAAGTGGCTC CCAAACTACT CAACTAAAGG GGTCGTCATC

    801  ACCCAATTCT CACTCTTCAC AAAAGCGATA TTCTGAGGCA AAGGACGCAC

    851  ATATCTATAA CAAGCGATCA AAGCCAGATT AA


XbaI cuts in 2 sites •91

•648



Pho80cds 882 bp e 293aa

XbaI restriction sequence TCTAGA

1)91 bp position 31-32aa SR S=TCT TCC TCA TCG

R=AGA AGG


2)648 bp position 216-217-218aa VLD V=TT GTC GTA GTG

L=TTA TTG CTT CTA CTC CTG

D=GAT GAC


5'3' Frame 1 Met E S T S G E R S E N I H E D Q G I P K V I L P A D F N K C S R T D L V V L I S R Met L V S L I A I N E N S A T K K S D D Q I T L T R Y H S K I P P N I S I F N Y F I R L T K F S S L E H C V L Met T S L Y Y I D L L Q T V Y P D F T L N S L T A H R F L L T A T T V A T K G L C D S F S T N A H Y A K V G G V R C H E L N I L E N D F L K R V N Y R I I P R D H N I T L C S I E Q K Q K K F V I D K N A L G S L D L D S Y S Y V N R P K S G Y N V L D K Y Y R R I V Q L V G S F N A S P D K S R K V D Y V L P P N I D I V S E S G S Q T T Q L K G S S S P N S H S S Q K R Y S E A K D A H I Y N K R S K P D Stop

Virtual Sequence: SEQUENCE 293 AA; 33227 MW; 72918CAF845AE74C CRC64. 

    MESTSGERSE NIHEDQGIPK VILPADFNKC SRTDLVVLIS RMLVSLIAIN ENSATKKSDD
    QITLTRYHSK IPPNISIFNY FIRLTKFSSL EHCVLMTSLY YIDLLQTVYP DFTLNSLTAH
    RFLLTATTVA TKGLCDSFST NAHYAKVGGV RCHELNILEN DFLKRVNYRI IPRDHNITLC
    SIEQKQKKFV IDKNALGSLD LDSYSYVNRP KSGYNVLDKY YRRIVQLVGS FNASPDKSRK
    VDYVLPPNID IVSESGSQTT QLKGSSSPNS HSSQKRYSEA KDAHIYNKRS KPD


PHO80 Primer sequences:

t93c 5'-cgctgattttaataaatgctccagaactgacctagtggtgc-3'

t93c antisense 5'-gcaccactaggtcagttctggagcatttattaaaatcagcg-3'

t648c 5'-atcgtccaaaaagtggatataatgtcctagataaatactatcgaagaatag-3'

t648c antisense 5'-ctattcttcgatagtatttatctaggacattatatccactttttggacgat-3'

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