Davidson Missouri W/Software

From 2007.igem.org

< Davidson Missouri W(Difference between revisions)
 
(4 intermediate revisions not shown)
Line 1: Line 1:
-
<center>[[Davidson Missouri W| <span style="color:red">Home</span>]] | [[Davidson Missouri W/Background Information| <span style="color:red">Background Information</span>]] | [[Davidson Missouri W/Solving the HPP in vivo| <span style="color:red">Current Project: Solving the Hamiltonian Path Problem ''in vivo''</span>]] | [[Davidson Missouri W/Mathematical Modeling| <span style="color:red">Mathematical Modeling</span>]] | [[Davidson Missouri W/Gene splitting| <span style="color:red"> Gene Splitting </span>]] | [[Davidson Missouri W/Controlling Expression| <span style="color:red"> Controlling Expression </span>]] | [[Davidson Missouri W/Traveling Salesperson Problem| <span style="color:red">Traveling Salesperson Problem</span> ]] | [[Davidson Missouri W/Software|<span style="color:black">Software</span>]] | [[Davidson Missouri W/Resources and Citations|<span style="color:red">Resources and Citations</span>]]</center>
+
<center>[[Davidson Missouri W| <span style="color:red">Home</span>]] | [[Davidson Missouri W/Background Information| <span style="color:red">Background Information</span>]] | [[Davidson Missouri W/Solving the HPP in vivo| <span style="color:red">Current Project: Solving the Hamiltonian Path Problem ''in vivo''</span>]] | [[Davidson Missouri W/Mathematical Modeling| <span style="color:red">Mathematical Modeling</span>]] | [[Davidson Missouri W/Gene splitting| <span style="color:red"> Gene Splitting </span>]] | [[Davidson Missouri W/Results| <span style="color:red">Results</span>]] | [[Davidson Missouri W/Traveling Salesperson Problem| <span style="color:red">Traveling Salesperson Problem</span> ]] | [[Davidson Missouri W/Software|<span style="color:black">Software</span>]] | [[Davidson Missouri W/Resources and Citations|<span style="color:red">Resources and Citations</span>]]</center>
<hr>
<hr>
Line 6: Line 6:
* [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
* [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
* [[Davidson Missouri W/Web tool| Gene Splitter]] ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
* [[Davidson Missouri W/Web tool| Gene Splitter]] ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
-
* Matlab programs: [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m| FlipLength], [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m| PureFlip], [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m| BiasWeighter].
+
* Matlab programs:
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength],  
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip],  
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter],
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpVTgraph.m False positives for an 8 edge / 5 node graph],
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/davidson85Iweighter.m Counter Program for an 8 edge / 5 node graph],
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/adelman147.m Adelman's false positives with 14 edges / 7 nodes],
 +
#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpweighter.m Counter Program for Adelman's False Positives].
 +
 
 +
<br>
 +
<hr>
 +
<center>
 +
<[[Davidson Missouri W/Traveling Salesperson Problem | Previous Section]] | [[Davidson Missouri W/Resources and Citations | Next Section>]]
 +
</center>

Latest revision as of 18:06, 22 October 2007

Home | Background Information | Current Project: Solving the Hamiltonian Path Problem in vivo | Mathematical Modeling | Gene Splitting | Results | Traveling Salesperson Problem | Software | Resources and Citations


We have written computer software to help us with our projects.

  • [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
  • Gene Splitter ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
  • Matlab programs:
  1. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength],
  2. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip],
  3. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter],
  4. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpVTgraph.m False positives for an 8 edge / 5 node graph],
  5. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/davidson85Iweighter.m Counter Program for an 8 edge / 5 node graph],
  6. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/adelman147.m Adelman's false positives with 14 edges / 7 nodes],
  7. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpweighter.m Counter Program for Adelman's False Positives].



< Previous Section | Next Section>