Melbourne/Lab Notebook

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[[Melbourne|<Back to team home page>]]  
[[Melbourne|<Back to team home page>]]  
 +
*Gas Vesicle lab notebook:
 +
** [[Melbourne/Lab GV Notebook|Gas Vesicles Notebook]]
-
==Week 1==
+
*Blue photoreceptor notebook:
-
*25 June 2007: Prepared LB agar plates Amp & Kana.
+
** [[Melbourne/Lab BL Notebook|Blue Photoreceptor Notebook]]
-
*25 June 2007: [[Melbourne/IGEM 2007 kit|Resuspended the following from Registry plates]] & [[Melbourne/Transformation Protocol shorter|Transformed (shorter protocol)]] into competent DH5alpha cells.
+
-
*#[[Melbourne/BBa_I15008|'''P2 21A''']] - (BBa_I15008, ho1, Kan) -> No colonies on plates
+
-
*#[[Melbourne/BBa_I15009|'''P2 21C''']] - (BBa_I15009, PcyA, Kan) ->No colonies on plates
+
-
*#[[Melbourne/BBa_R0084|'''P1 11H''']] - (BBa_R0084, OmpR positive promoter, Amp)->Small number of colonies.
+
-
 
+
*Photoreceptor & control system lab notebooks:
-
 
+
** [[Melbourne/Lab Notebook Weeks 1-4|Weeks 1-4]]
-
*26 June 2007: [[Melbourne/IGEM 2007 kit|Resuspended the following from Registry plates]] & [[Melb:Transformation Protocol|Transformed]] into Joe's competent DH5alpha cells.
+
** [[Melbourne/Lab Notebook Weeks 5-8|Weeks 5-8]]
-
*#[[Melbourne/BBa_B0034|'''P1 3O''']] (BBa_B0034, RBS, Amp)
+
** [[Melbourne/Lab Notebook Weeks 9-12|Weeks 9-12]]
-
*#[[Melbourne/BBa_C0051|'''P1 5G''']] (BBa_C0051, c1 protein, Amp)
+
** [[Melbourne/Lab Notebook Weeks 13-16|Weeks 13-16]]
-
*#[[Melbourne/BBa_B0010|'''P2 3P''']] (BBa_B0010, Terminator, Amp)
+
** [[Melbourne/Lab Notebook Weeks 17-18|Weeks 17-18]]
-
 
+
-
*26 June 2007: Streaked the following cells:
+
-
*#[[Melbourne/pJS010|'''pJS010''']] (from solid agar, Amp)
+
-
*#[[Melbourne/Fusion|'''Fusion protein''']] (from glycerol stock, Amp?)
+
-
*#[[Melbourne/BBa_I15010|'''BBa_I15010''']] (from solid agar, Kan)
+
-
 
+
-
*27 June 2007: [[Melb:Transformation Protocol|Transformed]] into Joe's competent DH5alpha cells.
+
-
*#[[Melbourne/BBa_I15008|'''P2 21A''']] (Kan)
+
-
*#[[Melbourne/BBa_I15009|'''P2 21C''']] (Kan)
+
-
 
+
-
 
+
-
<font color="red"><b>Liquid culture</b></font>
+
-
#[[Melb:Growing up cells|Prepared]] 30mL of Amp LB (100ug/mL). Prepared 5mL Kan LB (50mg/mL).
+
-
#Aliquoted 5mL Amp LB into 6 50mL falcon tubes
+
-
#To the Amp LB aliquots single transformed colonies from plates of the following were introduced:
+
-
#*[[Melbourne/pJS010|'''pJS010''']]
+
-
#*[[Melbourne/Fusion|'''Fusion''']]
+
-
#*[[Melbourne/BBa_B0034|'''P1 3O''']]
+
-
#*[[Melbourne/BBa_C0051|'''P1 5G''']]
+
-
#*[[Melbourne/BBa_B0010|'''P2 3P''']]
+
-
#*[[Melbourne/BBa_R0084|'''P1 11H''']]
+
-
#To the Kan LB a single colony from the transformation plate of [[Melbourne/BBa_I15010|'''BBa_I15010''']] was introduced.
+
-
#Cells incubated at 37degrees with shaking overnight.
+
-
 
+
-
<font size=3><b>28 June 2007
+
-
</b>
+
-
</font>
+
-
 
+
-
<font color="red"><b>Miniprep</b></font>
+
-
#[[Melb:Miniprep protocol|Minipreped]] the cultures grown overnight after putting aside 1mL(sterile) for glycerol stocks:
+
-
#*[[Melbourne/pJS010|'''pJS010''']]
+
-
#*[[Melbourne/Fusion|'''Fusion''']]
+
-
#*[[Melbourne/BBa_B0034|'''P1 3O''']]
+
-
#*[[Melbourne/BBa_C0051|'''P1 5G''']]
+
-
#*[[Melbourne/BBa_B0010|'''P2 3P''']]
+
-
#*[[Melbourne/BBa_R0084|'''P1 11H''']]
+
-
#*[[Melbourne/BBa_I15010|'''I15010''']]
+
-
#Stored in -20 freezer
+
-
 
+
-
 
+
-
<font color="red"><b>Liquid culture</b></font>
+
-
#[[Melb:Growing up cells|Cultured]] the following cells from transformed plates:
+
-
#*[[Melbourne/BBa_R0084|'''P1 11H''']] (BBa_R0084)
+
-
#*[[Melbourne/BBa_I15010|'''BBa_I15010''']]
+
-
#*[[Melbourne/BBa_B0034|'''P1 3O''']] (BBa_B0034)
+
-
#*[[Melbourne/BBa_C0051|'''P1 5G''']] (BBa_C0051)
+
-
#*[[Melbourne/BBa_I15008|'''P1 21A''']] (BBa_I15008)
+
-
#*[[Melbourne/BBa_I15009|'''P1 21C''']] (BBa_I15009)
+
-
 
+
-
<font size=3><b>29 June 2007
+
-
</b>
+
-
</font>
+
-
<font color="red"><b>Miniprep</b></font>
+
-
#[[Melb:Miniprep protocol|Minipreped]] the cultures grown overnight after putting aside 1mL(sterile) for glycerol stocks:
+
-
#*[[Melbourne/BBa_R0084|'''P1 11H''']] (BBa_R0084)
+
-
#*[[Melbourne/BBa_I15010|'''BBa_I15010''']]
+
-
#*[[Melbourne/BBa_B0034|'''P1 3O''']] (BBa_B0034)
+
-
#*[[Melbourne/BBa_C0051|'''P1 5G''']] (BBa_C0051)
+
-
#*[[Melbourne/BBa_I15008|'''P1 21A''']] (BBa_I15008)
+
-
#*[[Melbourne/BBa_I15009|'''P1 21C''']] (BBa_I15009)
+
-
 
+
-
#Stored in -20 freezer
+
-
 
+
-
 
+
-
==Week 2==
+
-
*2 July 2007: [[Melbourne/IGEM 2007 kit|Resuspended the following from Registry plates]] & [[Melb:Transformation Protocol|Transformed]] into Joe's competent DH5alpha cells.
+
-
*#Q04510
+
-
*#E0241
+
-
*#E0040
+
-
*#B0014
+
-
*#J61035
+
-
 
+
-
*3 July 2007: [[Melb:Transformation Protocol|Re Transformed]] into Joe's competent DH5alpha cells. Each Plate had additional 40uL of 50mg/ml Ampicillan spread on surface.
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J''']]  -> Three colonies -> grew in liquid culture 4 july
+
-
*#[[Melbourne/BBa_E0040|'''P1 5H''']] -> Multiple colonies at edge -> did not grow in overnight liquid culture 4 july 'poor amp spreading'
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L''']] -> Three colonies -> grew in liquid culture 4 july
+
-
 
+
-
*4 July 2007:
+
-
 
+
-
<font color="red"><b>Ampicillin Plates</b></font>
+
-
*Made up 25 Ampicillin plates using 400mL LB agar prepared on the 25th of June. 
+
-
**Used 100mg/ml Ampicillin stock from Gooley Lab - In bag in left freezer near our lab bench.
+
-
 
+
-
<font color="red"><b>Transformation</b></font> <BR>
+
-
[[Melbourne/Transformation Protocol|Transformed]] the following and grew on new ampicillin plates
+
-
*[[Melbourne/BBa_E0040|'''P1 5H''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L''']]
+
-
**Also Plated an untransformed control (subjected to transformation protocol in absense of DNA) and a blank plate control (no cells)
+
-
 
+
-
<font color="red"><b>Liquid Culture</b></font><BR>
+
-
*[[Melbourne/Growing up cells|Cultured]] 2 colonies from each of the following transformed plates and labelled as follows
+
-
**[[Melbourne/BBa_B0010|'''P2 3P 1''']]
+
-
**[[Melbourne/BBa_B0010|'''P2 3P 2''']]
+
-
**[[Melbourne/BBa_I15010|'''I15010 1''']]
+
-
**[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
**[[Melbourne/pJS010|'''pJS010 1''']]
+
-
**[[Melbourne/pJS010|'''pJS010 2''']]
+
-
**[[Melbourne/Fusion|'''Fusion 1''']]
+
-
**[[Melbourne/Fusion|'''Fusion 2''']]
+
-
**[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
**[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
**[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
**[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
**[[Melbourne/BBa_Q04510|'''P2 13K 1''']]
+
-
**[[Melbourne/BBa_Q04510|'''P2 13K 2''']]
+
-
**[[Melbourne/BBa_B0014|'''P1 1G 1''']]
+
-
**[[Melbourne/BBa_B0014|'''P1 1G 2''']]
+
-
**[[Melbourne/BBa_R0084|'''P1 11H 1''']]
+
-
**[[Melbourne/BBa_R0084|'''P1 11H 2''']]
+
-
**[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
**[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
**suspected contaminating colony from [[Melbourne/BBa_J61035|'''P4 8J''']]
+
-
 
+
-
<font size=3><b>5 July 2007
+
-
</b>
+
-
</font>
+
-
 
+
-
<font color="red"><b>Miniprep</b></font><BR>
+
-
*1mL culture from the 4th of Julyput aside for glycerol stocks under sterile conditions.  Labelled with todays date 5/7
+
-
*miniprepped the following overnight cultures set up on the 4th of July.  Final elution was performed with TE buffer prepared on 25/06/07 rather than nuclease free water. Labelled with todays date 5/7.
+
-
**[[Melbourne/BBa_B0010|'''P2 3P 1''']]
+
-
**[[Melbourne/BBa_B0010|'''P2 3P 2''']]
+
-
**[[Melbourne/BBa_I15010|'''I15010 1''']]
+
-
**[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
**[[Melbourne/pJS010|'''pJS010 1''']]
+
-
**[[Melbourne/pJS010|'''pJS010 2''']]
+
-
**[[Melbourne/Fusion|'''Fusion 1''']]
+
-
**[[Melbourne/Fusion|'''Fusion 2''']]
+
-
**[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
**[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
**[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
**[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
**[[Melbourne/BBa_Q04510|'''P2 13K 1''']](eluted in 130uL due to accidental double application of 50uL elution)
+
-
**[[Melbourne/BBa_Q04510|'''P2 13K 2''']]
+
-
**[[Melbourne/BBa_B0014|'''P1 1G 1''']]
+
-
**[[Melbourne/BBa_B0014|'''P1 1G 2''']]
+
-
*the following liquid cultures were not miniprepped due to failure (no growth)
+
-
**[[Melbourne/BBa_R0084|'''P1 11H 1''']]
+
-
**[[Melbourne/BBa_R0084|'''P1 11H 2''']]
+
-
**[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
**[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
**suspected contaminating colony from [[Melbourne/BBa_J61035|'''P4 8J''']]
+
-
<BR>
+
-
<font color="red"><b>Digest</b></font> <BR>
+
-
Performed the following [[Melbourne/Diagnostic Digest|digests]] on DNA from the above miniprep <BR><BR>
+
-
<font color="green"><b>EcoR1/Pst1 with buffer 3</b></font>
+
-
*[[Melbourne/BBa_I15010|'''I15010 1''']]
+
-
*[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
*[[Melbourne/BBa_Q04510|'''P2 13K 1''']]
+
-
*[[Melbourne/BBa_Q04510|'''P2 13K 2''']]
+
-
<font color="green"><b>EcoR1/HaeII in buffer 2</b></font>
+
-
*[[Melbourne/BBa_B0010|'''P2 3P 1''']]
+
-
*[[Melbourne/BBa_B0010|'''P2 3P 2''']]
+
-
*[[Melbourne/BBa_B0014|'''P1 1G 1''']]
+
-
*[[Melbourne/BBa_B0014|'''P1 1G 2''']]
+
-
<font color="green"><b>XbaI/SpeI in buffer 2</b></font>
+
-
*[[Melbourne/pJS010|'''pJS010 1''']]
+
-
*[[Melbourne/pJS010|'''pJS010 2''']]
+
-
 
+
-
Incubated for 2hours at 37 degrees, before addition of loading dye and storage at -20
+
-
 
+
-
<font color="red"><b>Transformation</b></font><BR>
+
-
*[[Melbourne/Transformation Protocol|Transformed]] P1 11H from resuspended DNA.
+
-
 
+
-
<font color="red"><b>Liquid Culture</b></font>
+
-
*[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
*[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
 
+
-
<font size=3><b>6 July 2007
+
-
</b>
+
-
</font>
+
-
 
+
-
<font color="red"><b>Digest Gel</b></font><BR>
+
-
* Prepared 20 lane 100mL [[Melbourne/Preparing an agarose gel|agarose gel]] with 0.5xTBE buffer.
+
-
*[[Melbourne/Loading a DNA gel|Loaded]] 20uL of digest samples in the following lane order
+
-
*#1kb+ ladder
+
-
*#[[Melbourne/BBa_I15010|'''I15010 1''']]
+
-
*#[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
*#[[Melbourne/BBa_Q04510|'''P2 13K 1''']]
+
-
*#[[Melbourne/BBa_Q04510|'''P2 13K 2''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*#[[Melbourne/BBa_B0014|'''P1 1G 1''']]
+
-
*#[[Melbourne/BBa_B0014|'''P1 1G 2''']]
+
-
*#[[Melbourne/BBa_B0010|'''P2 3P 1''']]
+
-
*#[[Melbourne/BBa_B0010|'''P2 3P 2''']]
+
-
*#[[Melbourne/pJS010|'''pJS010 1''']]
+
-
*#[[Melbourne/pJS010|'''pJS010 2''']]
+
-
*Ran for 1.5hours at 95V
+
-
 
+
-
<font color="red"><b>Miniprep</b></font><BR>
+
-
*Put aside 1mL of liquid cultures set up on the 5th for glycerol stocks and labelled with todays date 6/7
+
-
*Miniprepped the remains of the cultures and labelled with todays date 6/7.  Samples were eluted with TE buffer.
+
-
*[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
*[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
 
+
-
 
+
-
<font color="red"><b>Digest</b></font><BR>
+
-
*[[Melbourne/Diagnostic Digest|Digested]] 5uL of each of the above miniprep DNA with EcoRI and PstI in buffer 3.
+
-
*Incubated for 2hours 25min at 37degrees
+
-
*Added 5uL 6x loading dye and stored at -20
+
-
 
+
-
<font color="red"><b>Glycerol Stocks</b></font><BR>
+
-
The following [[Melbourne/Glycerol Stocks|glycerol stocks]] were made:
+
-
*Put aside from cultures 5/7 (labelled with this date)
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*#[[Melbourne/BBa_B0014|'''P1 1G 1''']]
+
-
*#[[Melbourne/BBa_B0014|'''P1 1G 2''']]
+
-
*Put aside from cultures 6/7 (labelled with this date)
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*#[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
*#[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
Stored at -80
+
-
 
+
-
<font color="red"><b>Liquid Culture</b></font><BR>
+
-
[[Melbourne/Growing up cells|Cultured]] the following in 5mL LB
+
-
*[[Melbourne/BBa_I15010|'''I15010 1''']] (Kan)
+
-
*[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
*[[Melbourne/BBa_R0084|'''P1 11H 1''']] (Amp)
+
-
*[[Melbourne/BBa_R0084|'''P1 11H 2''']]
+
-
 
+
-
Also placed Kan plate in the incubator to test antibiotic efficiency - no growth on 8/7
+
-
 
+
-
<font size=3><b>7 July 2007
+
-
</b>
+
-
</font>
+
-
 
+
-
*Made 10x TAE buffer
+
-
 
+
-
<font color="red"><b>Digest Gel</b></font><BR>
+
-
*Prepared 8 lane 60mL [[Melbourne/Preparing an agarose gel|agarose gel]] with 1xTAE buffer.
+
-
*[[Melbourne/Loading a DNA gel|Loaded]] 20uL of digest samples from 6/7 in the following lane order.
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 1''']]
+
-
*#[[Melbourne/BBa_J61035|'''P4 8J 2''']]
+
-
*#[[Melbourne/BBa_E0040|'''P1 5H 1''']]
+
-
*#[[Melbourne/BBa_E0040|'''P1 5H 2''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 1''']]
+
-
*#[[Melbourne/BBa_E0241|'''P2 15L 2''']]
+
-
 
+
-
<font color="red"><b>Glycerol Stocks</b></font><BR>
+
-
The following [[Melbourne/Glycerol Stocks|glycerol stocks]] were made and dated 7/7:
+
-
*[[Melbourne/BBa_I15010|'''I15010 1''']]
+
-
*[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
*[[Melbourne/BBa_R0084|'''P1 11H 1''']]
+
-
*[[Melbourne/BBa_R0084|'''P1 11H 2''']]
+
-
Stored at -80
+
-
 
+
-
<font color="red"><b>Miniprep</b></font><BR>
+
-
*Miniprepped the remains of the cultures and labelled with todays date 7/7.  Samples were eluted with TE buffer.
+
-
 
+
-
<font color="red"><b>Digest</b></font><BR>
+
-
*[[Melbourne/Diagnostic Digest|Digested]] 5uL of each of the above miniprep DNA
+
-
**EcoRI/PstI in buffer 3
+
-
***[[Melbourne/BBa_I15010|'''I15010 1''']] (Kan)
+
-
***[[Melbourne/BBa_I15010|'''I15010 2''']]
+
-
***[[Melbourne/BBa_R0084|'''P1 11H 1''']] (Amp)
+
-
***[[Melbourne/BBa_R0084|'''P1 11H 2''']]
+
-
*Incubated for 3hours at 37degrees
+
-
*Added 5uL 6x loading dye and stored at -20
+
-
 
+
-
<font size=3><b>8 July 2007
+
-
</b>
+
-
</font>
+
-
 
+
-
<font color="red"><b>Transformation</b></font><BR>
+
-
Resuspended and [[Melbourne/Transformation Protocol|transformed]] the following
+
-
*[[Melbourne/BBa_R0082|'''P1 15P''']](BBa_R0082, Omp R+, Amp)
+
-
*[[Melbourne/BBa_R0083|'''P1 17H''']](BBa_R0083, truncated BBa_R0082 Omp R+, Amp)
+
-
*[[Melbourne/BBa_E0430|'''P1 11A''']](BBa_E0430, EYFP(RBS+,LVA-,term) Amp)
+
-
*[[Melbourne/BBa_E0840|'''P1 16E''']](BBa_E0430; RBS,GFP,term; Amp)
+
-
The following was also retransformed due to colonies on previous plate appearing to be contaminants and failure of plasmid isolation from these colonies.
+
-
*[[Melbourne/BBa_Q04510|'''P2 13K''']] (BBa_Q04510, c1 inverter, Kan)
+
-
 
+
-
==Week 3==
+
-
<font size=3><b>9 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*Digested I15010(E/P),P1-11H(E/H),P2-15L 1.5hrs run
+
-
*liquid culture P1-11H,I15010,P1-15P,P1-16E,P1-17H,P2-13K
+
-
<font size=3><b>10 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*Miniprep
+
-
*Digest P1-16E,P1-11A,P2-13K,I15010,P1-15P,P1-11H,P1-17H  1.0hrs run
+
-
*liquid culture I15010, P2
+
-
<font size=3><b>11 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*Digest for ligation P1-15P(1)10/7,P1-11H 10/7,P1-17H(1)10/7,P1-16E(2)10/7,P1-11A(1)10/7
+
-
*loaded order X/P P1-11A,X/P P1-16E,S/P P1-15P,S/P P1-11H
+
-
** Spe1(6uL)/Pst1(7.5uL)/AP(1.5uL), Buffer2 9uL, BSA 9uL, milliQ 27uL into 20uL aliquots with 10uL DNA.
+
-
** Xbal1(3uL)/PstI(4uL),Buffer2 6uL,10XBSA 6uL,milliQ 21uL into 20uL aliquots with 10uL DNA
+
-
*Excise bands of interest and purify invitrogen
+
-
*liquid culture P1-11A,P1-15P 10ml
+
-
*Transform P2-21B,P2-23N,P3-20I into DB3.1 heat shock.
+
-
*Glycerol stocks P1-11A,P1-16E,P1-11H,P1-15P,P1-17H
+
-
<font size=3><b>12 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*Ran Gel P1-11A,P1-16E,P1-15P,P1-11H
+
-
*miniprepped P1-11A,P1-15P
+
-
*Digest
+
-
*Ligate control=(2uL ligase buffer,1uL ligase,5uL vector(P1-15P),12uL H20)
+
-
*Ligate (2uL ligase buffer,1uL ligase,5uL vector(P1-15P),10uL insert(P1-11A),2uL H20)
+
-
*Liquid culture transformants 11/7
+
-
<font size=3><b>13 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*miniprep cultures from transformants 11/7
+
-
*Digestion P1-15P and P1-11A from 12/7/07  37degC 3hours 15 minutes stopped 5uL of 6X loading dye.
+
-
*Excise bands 800bp from P1-11A, 2Kbp from P1-15P and purified.
+
-
*Glycerol stocks of P3-20I,P2-21B,P2-23N
+
-
*Transform DH5a with ligation product
+
-
<font size=3><b>14 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*Transform using 10uL of ligation reaction
+
-
 
+
-
==Week 4==
+
-
<font size=3><b>16 July 2007
+
-
</b>
+
-
</font><BR>
+
-
*[[Melbourne/colony pcr|Colony PCR]]
+
-
<font size=3><b>18 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
*Purchased XbaI,EcoRI,PstI
+
-
*Miniprepped cultures 1,3,6 from 16/7
+
-
*Digestion with E/P
+
-
*Ran Gel:std,ctrl(from PCR reaction 1 earlier),Digest1,3,6,(P2-15P)ages ago,(P1-11A)ages ago?
+
-
 
+
-
==Week 5==
+
-
<font size=3><b>23 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
 
+
-
<font size=3><b>24 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
 
+
-
<font size=3><b>25 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
 
+
-
<font size=3><b>26 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
 
+
-
<font size=3><b>27 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
==Week 6==
+
-
<font size=3><b>30 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>31 July 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>1 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>2 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>3 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>4 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
==Week 7==
+
-
<font size=3><b>5 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>6 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>7 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>8 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>9 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>10 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>11 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
==Week 8==
+
-
<font size=3><b>12 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>13 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>14 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>15 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>16 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>17 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
 
+
-
<font size=3><b>18 Aug 2007
+
-
</b>
+
-
</font><BR>
+
-
 
+
-
==Week 9==
+
-
===19  Aug 2007===
+
-
===20  Aug 2007===
+
-
===21  Aug 2007===
+
-
===22  Aug 2007===
+
-
===23  Aug 2007===
+
-
===24  Aug 2007===
+
-
===25  Aug 2007===
+
-
==Week 10==
+
-
===26  Aug 2007===
+
-
===27  Aug 2007===
+
-
===28  Aug 2007===
+
-
===29  Aug 2007===
+
-
===30  Aug 2007===
+
-
===31  Aug 2007===
+
-
===1  Sept 2007===
+
-
==Week 11==
+
-
===2  Sept 2007===
+
-
===3  Sept 2007===
+
-
===4  Sept 2007===
+
-
===5  Sept 2007===
+
-
===6  Sept 2007===
+
-
===7  Sept 2007===
+
-
===8  Sept 2007===
+
-
==Week 12==
+
-
===9  Sept 2007===
+
-
===10  Sept 2007===
+
-
===11  Sept 2007===
+
-
===12  Sept 2007===
+
-
===13  Sept 2007===
+
-
===14  Sept 2007===
+
-
===15  Sept 2007===
+
-
==Week 13==
+
-
===16  Sept 2007===
+
-
===17 Sept 2007===
+
-
===18  Sept 2007===
+
-
===19  Sept 2007===
+
-
===20  Sept 2007===
+
-
===21  Sept 2007===
+
-
===22  Sept 2007===
+
-
==Week 13==
+
-
===23  Sept 2007===
+
-
===24  Sept 2007===
+
-
===25  Sept 2007===
+
-
===26  Sept 2007===
+
-
*Miniprepped the following
+
-
**TetR-RBS-P2,21A-ter A,B,C and D
+
-
**TetR-RBS-ComP-ter A,B,C and D
+
-
**GenRBS-ComA-ter A,B,C and D
+
-
**cI-L3 A,B,C and D
+
-
 
+
-
===27  Sept 2007===
+
-
===28  Sept 2007===
+
-
===29  Sept 2007===
+
-
==Week 14==
+
-
===30  Sept 2007===
+
-
===1  Oct 2007===
+
-
===2  Oct 2007===
+
-
===3  Oct 2007===
+
-
===4  Oct 2007===
+
-
===5  Oct 2007===
+
-
===6  Oct 2007===
+
-
==Week 15==
+
-
===7  Oct 2007===
+
-
===8  Oct 2007===
+
-
===9  Oct 2007===
+
-
===10  Oct 2007===
+
-
===11  Oct 2007===
+
-
===12  Oct 2007===
+
-
===13  Oct 2007===
+
-
==Week 16==
+
-
===14  Oct 2007===
+
-
===15  Oct 2007===
+
-
===16  Oct 2007===
+
-
===17  Oct 2007===
+
-
===18 Oct 2007===
+
-
===19  Oct 2007===
+
-
===20  Oct 2007===
+
-
==Week 16==
+
-
===21  Oct 2007===
+
-
===22  Oct 2007===
+
-
===23  Oct 2007===
+
-
===24  Oct 2007===
+
-
===25  Oct 2007===
+
-
===26  Oct 2007===
+

Latest revision as of 14:25, 26 October 2007

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Retrieved from "http://2007.igem.org/wiki/index.php/Melbourne/Lab_Notebook"