Melbourne/Software

From 2007.igem.org

Revision as of 02:28, 16 July 2007

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• Used for GVP component:
  • [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=3089519&uids=&dopt=gbwithparts&dispmax=1&sendto=| NCBI core nucleotide database for Gvp AF053765]
  • [http://www.ncbi.nlm.nih.gov/BLAST/| BLAST]
  • [http://www.ncbi.nlm.nih.gov/gorf/gorf.html| ORF prediction]
  • [http://au.expasy.org/tools/pi_tool.html| pI & MW (Expasy)]
  • [http://tools.neb.com/NEBcutter2/index.php NEB cutter 2.0]
  • [http://arbl.cvmbs.colostate.edu/molkit/mapper/index.html , Colostate Graphical map]
  • [http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites]
  • [http://insilico.ehu.es/restriction/many_seqs/ Restriction fragments of Linear sequences only]
  • [http://www.restrictionmapper.org/ Restriction fragments of circular sequences unfortunately verbose]
  • [http://www.clcbio.com/index.php?id=1102 (CLC)]
  • [http://www.idtdna.com/analyzer/Applications/OligoAnalyzer/ oligo analyzer]
  • [http://www.kazusa.or.jp/codon/ Codon usage database]
• Used for Blue light receptor component:

• Other usefull sites:
  • [http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI)]
  • [http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp| Profiling Ecoli chromosome]
  • [http://chemfinder.cambridgesoft.com/| Chemfinder]
  • [http://www.ebi.ac.uk/clustalw/| Clustal W alignment]
  • [http://www.sbc.su.se/~miklos/DAS/maindas.html| DAS transmembrane prediction]
  • [http://ezproxy.lib.unimelb.edu.au/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed| pubmed]
  • [http://www.mybio.net/biowiki/Main_Page| mybio tools]
  • [http://au.expasy.org/| EXPASY]
  • http://www.arabidopsis.org/
  • http://www.yeastgenome.org/
  • [http://www.uni-giessen.de/~gx1052/IECA/ieca.html| Ecoli database portal]