Week 5

From 2007.igem.org

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Line 1: Line 1:
::'''07/30/07'''
::'''07/30/07'''
-
*We control bacterial growth curve (link).
+
*We check [[growth curve]] for bacteria containing an intermediate plasmid.
-
*Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012] and [http://partsregistry.org/Part:BBa_J52034 J52034] and [http://partsregistry.org/Part:BBa_B0015 B0015].
+
*Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012], [http://partsregistry.org/Part:BBa_J52034 J52034] and [http://partsregistry.org/Part:BBa_B0015 B0015].
-
*We get along with the ligation [http://partsregistry.org/Part:BBa_R0051 R0051]+[http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 2 ul, insert 6 ul) and the ligation [http://partsregistry.org/Part:BBa_J04500 J04500]+ [http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)](vector 2 ul, insert 10 ul).
+
*Ligation [http://partsregistry.org/Part:BBa_R0051 R0051]+[http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 2ul, insert 6ul) and ligation [http://partsregistry.org/Part:BBa_J04500 J04500]+ [http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)](vector 2ul, insert 10ul).
Line 8: Line 8:
::'''07/31/07'''
::'''07/31/07'''
-
*There isn’t any colony for [http://partsregistry.org/Part:BBa_C0012 C0012] , so we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colony in 5 ml.
+
*There are no colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], thus we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colonies in 5ml.  
*We strake on plates 30/07 ligations.
*We strake on plates 30/07 ligations.
-
*We get along with the [http://partsregistry.org/Part:BBa_J04431 J04431] fluorescence test:
+
*We go along with the [http://partsregistry.org/Part:BBa_J04431 J04431] fluorescence test:
-
-From the glycerol stock we sprout 1 ml at 37°C for 1 hour in agitation.
+
-From the glycerol stock we sprout 1ml at 37°C for 1h in agitation.
-
-We verify the OD and the fluorescence every 15 minutes. The fluorescence compare at the istance t=210min and at the OD=0.5.
+
-Every 15 minutes we check bacterial OD and fluorescence. Cells are fluorescent at t= 210min and OD=0.5.
-
*At the end of this test we decide to repeat it to see if we can switch off the fluorescent cells with a major quantity of glucose to confirm our assumptions.
+
* We decide to repeat the test to understand if we can switch off the fluorescent cells with a higher amount of glucose.
-
We will attend this test on 07/08.
+
We will perform this test on 8th August.
Line 21: Line 21:
::'''08/01/07'''
::'''08/01/07'''
-
*We get along with:
+
 
-Miniprep of [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015];
-Miniprep of [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015];
-
-Digestion of [http://partsregistry.org/Part:BBa_B0015 B0015] with Xba/Pst1;
+
-[http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;
-
-Digestion of [http://partsregistry.org/Part:BBa_I52034 I52034] with Spe/Pst1;
+
-[http://partsregistry.org/Part:BBa_I52034 I52034] digestion with Spe/Pst1;
-
-Extraction from gel (we can’t see [http://partsregistry.org/Part:BBa_B0015 B0015]);
+
- Gel extraction (we can’t see [http://partsregistry.org/Part:BBa_B0015 B0015]);
-
-[http://partsregistry.org/Part:BBa_R0015 R0015]+[http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)] ligation which doesn’t give colonies so we transform with the other 10 ul of ligation;  
+
-[http://partsregistry.org/Part:BBa_R0015 R0015]+[http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)] ligation which doesn’t give colonies thus we transform with the other 10ul of ligation;  
-[http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051][http://partsregistry.org/Part:BBa_I763005 (I763005)]ligation which gives colonies so we inoculate in 5ml;
-[http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051][http://partsregistry.org/Part:BBa_I763005 (I763005)]ligation which gives colonies so we inoculate in 5ml;
Line 42: Line 42:
::'''08/02/07'''
::'''08/02/07'''
-
*Today we do:
+
 
-Miniprep of  [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)];
-Miniprep of  [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)];
Line 49: Line 49:
-A new [http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;
-A new [http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;
-
-Digested run on electroforesi gel but we have problems with gel because we don’t see the band;
+
-Run on electrophoresis gel. We have problems with gel because we don’t see the band;
-
-Band exstraction for [http://partsregistry.org/Part:BBa_B0015 B0015] e [http://partsregistry.org/Part:BBa_I763005 I763005];
+
-Band extraction for [http://partsregistry.org/Part:BBa_B0015 B0015] e [http://partsregistry.org/Part:BBa_I763005 I763005];
-
-We observe thre aren’t colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], but there are colonies for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)], so we identify the correct ligation protocol;
+
-There are no colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], but there are colonies for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)]. So, we identify the correct ligation protocol;
- [http://partsregistry.org/Part:BBa_R0010 R0010], [http://partsregistry.org/Part:BBa_P0412 P0412], [http://partsregistry.org/Part:BBa_C0012 C0012]  transformation;
- [http://partsregistry.org/Part:BBa_R0010 R0010], [http://partsregistry.org/Part:BBa_P0412 P0412], [http://partsregistry.org/Part:BBa_C0012 C0012]  transformation;
Line 59: Line 59:
-Inoculation in 5 ml for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] and for [http://partsregistry.org/Part:BBa_J22101 J22101];
-Inoculation in 5 ml for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] and for [http://partsregistry.org/Part:BBa_J22101 J22101];
-
- [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)]  fluorescence test to verify if the filter for RFP is adapted, but it isn’t.
+
- [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)]  fluorescence test to check if the RFP filter works properly.
Line 65: Line 65:
      
      
::'''08/03/07'''
::'''08/03/07'''
-
*We get along with:
 
-
-Miniprep for J22101 and for R0051+ I13507 (I763007);
 
-
- J22101 digestion with Xba/Pst1 ;
+
-Miniprep for [http://partsregistry.org/Part:BBa_J22101 J22101] and for [http://partsregistry.org/Part:BBa_R0051 R0051]+ [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)];
-
- Control digestion of R0051 + I13507  (I763007);
+
- [http://partsregistry.org/Part:BBa_J22101 J22101] digestion with Xba/Pst1 ;
-
- J04500+C0051 (I763005) and B0015 and J22101 and R0051 + I13507 (I763007) run on electroforesi gel and J04500+C0051 (I763005) and  J22101 estraction;
+
- Control digestion of [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507]  [http://partsregistry.org/Part:BBa_I763007 (I763007)];
-
-Glycerol stock preparation;
+
- [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)] and [http://partsregistry.org/Part:BBa_B0015 B0015]and [http://partsregistry.org/Part:BBa_J22101 J22101] and [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] run on electrophoresis gel and [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)] and  [http://partsregistry.org/Part:BBa_J22101 J22101] extraction;
 +
-Glycerol stocks preparation.
-
[[Bologna | Back]]
+
[[Bologna#Diary | Back]]

Latest revision as of 15:51, 26 October 2007

07/30/07
  • We check growth curve for bacteria containing an intermediate plasmid.
  • Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012], [http://partsregistry.org/Part:BBa_J52034 J52034] and [http://partsregistry.org/Part:BBa_B0015 B0015].
  • Ligation [http://partsregistry.org/Part:BBa_R0051 R0051]+[http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 2ul, insert 6ul) and ligation [http://partsregistry.org/Part:BBa_J04500 J04500]+ [http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)](vector 2ul, insert 10ul).



07/31/07
  • There are no colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], thus we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colonies in 5ml.
  • We strake on plates 30/07 ligations.
  • We go along with the [http://partsregistry.org/Part:BBa_J04431 J04431] fluorescence test:

-From the glycerol stock we sprout 1ml at 37°C for 1h in agitation.

-Every 15 minutes we check bacterial OD and fluorescence. Cells are fluorescent at t= 210min and OD=0.5.

  • We decide to repeat the test to understand if we can switch off the fluorescent cells with a higher amount of glucose.

We will perform this test on 8th August.



08/01/07

-Miniprep of [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015];

-[http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;

-[http://partsregistry.org/Part:BBa_I52034 I52034] digestion with Spe/Pst1;

- Gel extraction (we can’t see [http://partsregistry.org/Part:BBa_B0015 B0015]);

-[http://partsregistry.org/Part:BBa_R0015 R0015]+[http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)] ligation which doesn’t give colonies thus we transform with the other 10ul of ligation;

-[http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051][http://partsregistry.org/Part:BBa_I763005 (I763005)]ligation which gives colonies so we inoculate in 5ml;

-Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012] (4ul) and for [http://partsregistry.org/Part:BBa_J22101 J22101] (2ul);

-A new [http://partsregistry.org/Part:BBa_R0051 R0051]+ [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 4ul, insert 8ul) ligation.



08/02/07

-Miniprep of [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)];

-Control digestion of 5 ul with Eco/Pst1;

-A new [http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;

-Run on electrophoresis gel. We have problems with gel because we don’t see the band;

-Band extraction for [http://partsregistry.org/Part:BBa_B0015 B0015] e [http://partsregistry.org/Part:BBa_I763005 I763005];

-There are no colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], but there are colonies for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)]. So, we identify the correct ligation protocol;

- [http://partsregistry.org/Part:BBa_R0010 R0010], [http://partsregistry.org/Part:BBa_P0412 P0412], [http://partsregistry.org/Part:BBa_C0012 C0012] transformation;

-Inoculation in 5 ml for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] and for [http://partsregistry.org/Part:BBa_J22101 J22101];

- [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] fluorescence test to check if the RFP filter works properly.



08/03/07

-Miniprep for [http://partsregistry.org/Part:BBa_J22101 J22101] and for [http://partsregistry.org/Part:BBa_R0051 R0051]+ [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)];

- [http://partsregistry.org/Part:BBa_J22101 J22101] digestion with Xba/Pst1 ;

- Control digestion of [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)];

- [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)] and [http://partsregistry.org/Part:BBa_B0015 B0015]and [http://partsregistry.org/Part:BBa_J22101 J22101] and [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] run on electrophoresis gel and [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)] and [http://partsregistry.org/Part:BBa_J22101 J22101] extraction;

-Glycerol stocks preparation.



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