Paris/Macroscopic Models
From 2007.igem.org
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Those models are at macroscopic scale. They are focused on the evolution of the population, with global rules avoiding description of all the microscopic mechanisms. We present tree different works, with different approaches (ODE, automaton) | Those models are at macroscopic scale. They are focused on the evolution of the population, with global rules avoiding description of all the microscopic mechanisms. We present tree different works, with different approaches (ODE, automaton) | ||
| - | =[[Paris/Continuous_model|ODE model | + | =[[Paris/Continuous_model| Exponential growth of cellular populations: analytic analysis of an ODE model]]= |
We present here a theoretical approach based on population dynamics. We consider the case of a well mixed, homogeneous, culture of the SMB organism, i.e. there is no space in this analysis and we follow only the variation of the different cell lines concentrations in the culture volume. | We present here a theoretical approach based on population dynamics. We consider the case of a well mixed, homogeneous, culture of the SMB organism, i.e. there is no space in this analysis and we follow only the variation of the different cell lines concentrations in the culture volume. | ||
| - | =[[Paris/Cell_auto| | + | =[[Paris/Cell_auto|Potential macroscopic effect of spatial aspects of Dap diffusion: cellular automaton on a grid]]= |
We want with this work to characterize the diffusion of the DAP and the effect on the cells. We have a lawn of bacterias with germinal cells and some somatic cells. | We want with this work to characterize the diffusion of the DAP and the effect on the cells. We have a lawn of bacterias with germinal cells and some somatic cells. | ||
| - | =[[Paris/Cell_auto_2| | + | =[[Paris/Cell_auto_2|Potential macroscopic effect of stochastic and spatial aspects of Dap diffusion and cell growth]]= |
We try with this model to see the effect of DAP on the cells. We have a growing culture with germinal cells and somatic cells. | We try with this model to see the effect of DAP on the cells. We have a growing culture with germinal cells and somatic cells. | ||
We want to see if we can have different kinds of evolution for our cells. | We want to see if we can have different kinds of evolution for our cells. | ||
as we can see in the simple automaton the diffusion mechanism and the effect on differentiation can be describe more accurately, so for the moment we just ignore the diffusion putting a black box on it and just focused on the total number of DAP entities. | as we can see in the simple automaton the diffusion mechanism and the effect on differentiation can be describe more accurately, so for the moment we just ignore the diffusion putting a black box on it and just focused on the total number of DAP entities. | ||
Latest revision as of 16:53, 25 October 2007
Those models are at macroscopic scale. They are focused on the evolution of the population, with global rules avoiding description of all the microscopic mechanisms. We present tree different works, with different approaches (ODE, automaton)
Exponential growth of cellular populations: analytic analysis of an ODE model
We present here a theoretical approach based on population dynamics. We consider the case of a well mixed, homogeneous, culture of the SMB organism, i.e. there is no space in this analysis and we follow only the variation of the different cell lines concentrations in the culture volume.
Potential macroscopic effect of spatial aspects of Dap diffusion: cellular automaton on a grid
We want with this work to characterize the diffusion of the DAP and the effect on the cells. We have a lawn of bacterias with germinal cells and some somatic cells.
Potential macroscopic effect of stochastic and spatial aspects of Dap diffusion and cell growth
We try with this model to see the effect of DAP on the cells. We have a growing culture with germinal cells and somatic cells. We want to see if we can have different kinds of evolution for our cells. as we can see in the simple automaton the diffusion mechanism and the effect on differentiation can be describe more accurately, so for the moment we just ignore the diffusion putting a black box on it and just focused on the total number of DAP entities.
