NYMU Taipei/Construct

From 2007.igem.org

(Difference between revisions)
 
(42 intermediate revisions not shown)
Line 213: Line 213:
                 <li>May be checked with: BtgZI</li>
                 <li>May be checked with: BtgZI</li>
                 <li>8/27, 2007</li>
                 <li>8/27, 2007</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
 +
<hr />
 +
<h2>OmpRBS assay construct: pLacIQ + OmpRBS + GFP</h2>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:PLacIQ-OmpRBS-GFP (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>our first construct for OmpRBS blocking assay under glucose stimulus</li>
 +
                <li>Insert size: 1004bp (XbaI to SpeI)</li>
 +
                <li>Total vector size: 5,425bp</li>
 +
                <li>V-I: 4,421bp</li>
 +
                <li>May be checked with: BtgZI</li>
 +
                <li>10/24, 2007</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
 +
<hr />
 +
<h2>OmpRBS assay construct: pLacIQ + OmpRBS</h2>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:PLacIQ-OmpRBS (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>our first construct for OmpRBS blocking assay under glucose stimulus</li>
 +
                <li>Insert size: 120bp (XbaI to SpeI)</li>
 +
                <li>Total vector size: 4,541bp</li>
 +
                <li>V-I: 4,421bp</li>
 +
                <li>May be checked with:</li>
 +
                <li>12/13, 2007</li>
             </ul>
             </ul>
             </td>
             </td>
Line 242: Line 276:
             <ul>
             <ul>
                 <li>Insert size: 730bp</li>
                 <li>Insert size: 730bp</li>
-
                 <li>Total vector size: 2883bp</li>
+
                 <li>Total vector size: 2,883bp</li>
-
                 <li>V-I: 2153bp</li>
+
                 <li>V-I: 2,153bp</li>
                 <li>May be checked with: AgeI</li>
                 <li>May be checked with: AgeI</li>
             </ul>
             </ul>
Line 257: Line 291:
             <ul>
             <ul>
                 <li>Insert size: 170bp</li>
                 <li>Insert size: 170bp</li>
-
                 <li>PCR product size: 202bp</li>
+
                 <li>PCR product size: 209bp</li>
                 <li>May be checked with: RsaI</li>
                 <li>May be checked with: RsaI</li>
                 <li>There is a extra SpeI site formed due to the addition of one extra stop codon  
                 <li>There is a extra SpeI site formed due to the addition of one extra stop codon  
Line 271: Line 305:
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>Insert size: 133bp</li>
+
                 <li>Insert size: 220bp</li>
-
                 <li>PCR product size: 159bp</li>
+
                 <li>PCR product size: 233bp</li>
                 <li>May be checked with AluI</li>
                 <li>May be checked with AluI</li>
             </ul>
             </ul>
Line 285: Line 319:
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>Insert size: 230bp</li>
+
                 <li>Insert size: 292bp</li>
-
                 <li>Total vector size: 2291bp</li>
+
                 <li>Total vector size: 2,454bp</li>
-
                 <li>V-I: 2053bp</li>
+
                 <li>V-I: 2,162bp</li>
             </ul>
             </ul>
             </td>
             </td>
Line 295: Line 329:
<h3>Phase 2 of system 1: (RBS+CinR) <font color="#ff0000">+</font> (RBS+HSL) = CinR+HSL</h3>
<h3>Phase 2 of system 1: (RBS+CinR) <font color="#ff0000">+</font> (RBS+HSL) = CinR+HSL</h3>
<table>
<table>
-
    <tbody>
 
         <tr>
         <tr>
-
             <td>[[Image:RBS+cinR+RBS+HSL.jpg|300px]]</td>
+
             <td>[[Image:CinR-HSL (plasmid).jpg|300px]]</td>
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>Insert size: 1530bp</li>
+
                 <li>Insert size: 1,524bp</li>
-
                 <li>Total vector size: 3591bp</li>
+
                 <li>Total vector size: 3,677bp</li>
-
                 <li>V-I: 2053bp</li>
+
                 <li>V-I: 2153bp</li>
             </ul>
             </ul>
             </td>
             </td>
         </tr>
         </tr>
-
    </tbody>
 
</table>
</table>
 +
<h3>Phase 3 of system 1: pOmpC + TATA_INSA <font color="#ff0000">+</font> TATB_INSB</h3>
<h3>Phase 3 of system 1: pOmpC + TATA_INSA <font color="#ff0000">+</font> TATB_INSB</h3>
<table>
<table>
Line 328: Line 361:
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>&nbsp;</li>
+
                 <li>Insert size: 1,633bp</li>
-
                 <li>item 2</li>
+
                 <li>Total vector size: 4,818bp</li>
-
                 <li>item 3</li>
+
                 <li>V-I: 3,185bp</li>
-
                <li>item 4</li>
+
-
                <li>item 5</li>
+
             </ul>
             </ul>
             </td>
             </td>
Line 338: Line 369:
</table>
</table>
-
<h3>Phase 3 of system 1: pOmpC + TATA_INSA + TATB_INSB <font color="#ff0000">+ </font>CinR+HSL+D-term</h3>
+
<h3>Phase 4 of system 1: pOmpC + TATA_INSA + TATB_INSB <font color="#ff0000">+ </font>CinR+HSL+D-term</h3>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:System I (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>Insert size: 2,139bp</li>
 +
                <li>Total vector size: 4,292bp</li>
 +
                <li>V-I: 2,153bp</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
<hr />
<hr />
 +
<h2>System 2: pCinRHSL+ OmpRBS + (TATD+IDE) + D-term</h2>
<h2>System 2: pCinRHSL+ OmpRBS + (TATD+IDE) + D-term</h2>
<h3>Phase 1 of system 2: TATD <font color="#ff0000">+</font> IDE = TATD_IDE</h3>
<h3>Phase 1 of system 2: TATD <font color="#ff0000">+</font> IDE = TATD_IDE</h3>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:TATD IDE (insert).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>Insert size: 3,190bp</li>
 +
                <li>PCR product size: 3,203bp</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
 +
<h3>Phase 1 of system 2: pCinRHSL <font color="#ff0000">+</font> OmpRBS</h3>
<h3>Phase 1 of system 2: pCinRHSL <font color="#ff0000">+</font> OmpRBS</h3>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:PCinRHSL-OmpRBS (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>Insert size: 308bp</li>
 +
                <li>Total vector size: 2,461bp</li>
 +
                <li>V-I: 2,153bp</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
 +
<h3>Phase 2 of system 2: pCinRHSL + OmpRBS <font color="#ff0000">+</font> TATD_IDE</h3>
<h3>Phase 2 of system 2: pCinRHSL + OmpRBS <font color="#ff0000">+</font> TATD_IDE</h3>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:PCinRHSL-OmpRBS-TATD IDE (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>Insert size: 3,488bp</li>
 +
                <li>Total vector size: 5,641bp</li>
 +
                <li>V-I: 2,153bp</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
 +
<h3>Phase 3 of system 2: pCinRHSL + OmpRBS +&nbsp; TATD_IDE <font color="#ff0000">+</font> D-term</h3>
<h3>Phase 3 of system 2: pCinRHSL + OmpRBS +&nbsp; TATD_IDE <font color="#ff0000">+</font> D-term</h3>
 +
<table>
 +
        <tr>
 +
            <td>[[Image:System 2 (plasmid).jpg|300px]]</td>
 +
            <td>
 +
            <ul>
 +
                <li>Insert size: 3,589bp</li>
 +
                <li>Total vector size: 5,742bp</li>
 +
                <li>V-I: 2,153bp</li>
 +
            </ul>
 +
            </td>
 +
        </tr>
 +
</table>
<hr />
<hr />
 +
<h2>Basic Constructs</h2>
<h2>Basic Constructs</h2>
<h3>pOmpC in pSB1A2</h3>
<h3>pOmpC in pSB1A2</h3>
<p>
<p>
<table>
<table>
-
    <tbody>
 
         <tr>
         <tr>
-
             <td>[[Image:POmpC+plasmid.jpg|300px]]</td>
+
             <td>[[Image:POmpC (plasmid).jpg|300px]]</td>
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>BsmFI may be used to confirm the presence of pOmpC.</li>
+
                 <li>Insert size: 118bp</li>
-
                 <li>item 2</li>
+
                 <li>Total vector size: 2,271bp</li>
-
                 <li>item 3</li>
+
                 <li>V-I: 2,153bp</li>
-
                <li>item 4</li>
+
-
                <li>item 5</li>
+
             </ul>
             </ul>
             </td>
             </td>
         </tr>
         </tr>
-
    </tbody>
 
</table>
</table>
</p>
</p>
 +
<h3>pCinRHSL in pSB1A2</h3>
<h3>pCinRHSL in pSB1A2</h3>
<p>
<p>
<table>
<table>
-
    <tbody>
 
         <tr>
         <tr>
-
             <td>[[Image:PCinRHSL(plasmid).jpg|300px]]</td>
+
             <td>[[Image:PCinRHSL (plasmid).jpg|300px]]</td>
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>item 1</li>
+
                 <li>Insert size: 235bp</li>
-
                 <li>item 2</li>
+
                 <li>Total vector size: 2,388bp</li>
-
                 <li>item 3</li>
+
                 <li>V-I: 2,153bp</li>
-
                <li>item 4</li>
+
-
                <li>item 5</li>
+
             </ul>
             </ul>
             </td>
             </td>
         </tr>
         </tr>
-
    </tbody>
 
</table>
</table>
</p>
</p>
 +
<h3>RBS in pSB1A2</h3>
<h3>RBS in pSB1A2</h3>
<p>
<p>
<table>
<table>
-
    <tbody>
 
         <tr>
         <tr>
-
             <td>[[Image:RBS+plasmid.jpg|300px]]</td>
+
             <td>[[Image:RBS (plasmid).jpg|300px]]</td>
             <td>
             <td>
             <ul>
             <ul>
                 <li>BseR1 can be applied to check the insertion of RBS</li>
                 <li>BseR1 can be applied to check the insertion of RBS</li>
-
                 <li>item 2</li>
+
                 <li>Insert size: 22bp</li>
-
                 <li>item 3</li>
+
                 <li>Total vector size: 2,175bp</li>
-
                 <li>item 4</li>
+
                 <li>V-I: 2,153bp</li>
-
                <li>item 5</li>
+
             </ul>
             </ul>
             </td>
             </td>
         </tr>
         </tr>
-
    </tbody>
 
</table>
</table>
</p>
</p>
 +
<h3>D-term in pSB1AK3</h3>
<h3>D-term in pSB1AK3</h3>
<table>
<table>
-
    <tbody>
 
         <tr>
         <tr>
-
             <td>[[Image:D-term+pSB1AK3.jpg|300px]]</td>
+
             <td>[[Image:D-term (plasmid).jpg|300px]]</td>
             <td>
             <td>
             <ul>
             <ul>
-
                 <li>&nbsp;</li>
+
                 <li>Insert size: 105bp</li>
-
                 <li>&nbsp;</li>
+
                 <li>Total vector size: 3,290bp</li>
-
                 <li>&nbsp;</li>
+
                 <li>V-I: 3,185bp</li>
-
                <li>&nbsp;</li>
+
-
                <li>item 5</li>
+
             </ul>
             </ul>
             </td>
             </td>
         </tr>
         </tr>
-
    </tbody>
 
</table>
</table>
[https://2007.igem.org/Taipei Back]
[https://2007.igem.org/Taipei Back]

Latest revision as of 04:00, 13 December 2007

Contents

Assembly Ordering and Progress

system 1

System 1: glucose-sensing insulin generator (5 task left: 2 PCR and 3 biobrick standard assembly)
pOmpC RBS + TAT
 INSA RBS + TAT
 INSB RBS CinR RBS HSL D-term duration members assembly status
          RBS + CinR RBS + HSL   8/30-8/31 翔 1st assembly 9/01, 07
          CinR + HSL (RBS+)   9/1-9/4 宥,君,威 2nd assembly 9/02, 07
          CinR+HSL(RBS+) + D-term  9/16-9/27 宥,君,翔,pett 3rd assembly 9/27 07
  RBS + TATA+ INSA (PCR) RBS + TATB+ INSB (PCR)            9/28-9/30

銘, pett

 basic part (PCR) 9/30, 07
pOmpC + TATA_INSA (failed) TATB_INSB + CinR+HSL+D-term (wrong assembly)
 -10/5 pett 4th assembly 10/5,7,8 07
pOmpC + TATA_INSA               -10/11 pett 4th assembly
pOmpC + TATA_INS_A + TATB_INS_B
           -10/23   4th assembly
pOmpC + TATA_INS_A + TATB_INS_B + CinR+HSL+D-term     Final

system 2

System 2: insulin-sensing insulin destoryer (5 tasks left: 2 PCR and 3 biobrick standard assembly)
pCinRHSL OmpRBS RBS + TATD
 IDE D-term duration members assembly status
  OmpRBS (PCR) RBS + TATD+ IDE (PCR)
   -102

銘, 茹, pett

 basic part (PCR) 10/2 07
pCinRHSL + OmpRBS       -10/5 pett 1st assembly 10/5 07
pCinRHSL + OmpRBS + TATD_IDE (RBS+)   -10/11  pett 2nd assembly
pCinRHSL+OmpRBS+TATD_IDE + D-term     Final

 

Promoter assay construct: pOmpC+(RBS+EYFP)

POmpC-EYFP (plasmid).jpg
  • our first contruct for promoter activity assay under glucose stimulus
  • Insert size: 866bp (XbaI to SpeI)
  • Total vector size: 3,019bp
  • V-I: 2,153bp
  • May be checked with: BtgZI
  • 8/27, 2007

OmpRBS assay construct: pLacIQ + OmpRBS + GFP

PLacIQ-OmpRBS-GFP (plasmid).jpg
  • our first construct for OmpRBS blocking assay under glucose stimulus
  • Insert size: 1004bp (XbaI to SpeI)
  • Total vector size: 5,425bp
  • V-I: 4,421bp
  • May be checked with: BtgZI
  • 10/24, 2007

OmpRBS assay construct: pLacIQ + OmpRBS

PLacIQ-OmpRBS (plasmid).jpg
  • our first construct for OmpRBS blocking assay under glucose stimulus
  • Insert size: 120bp (XbaI to SpeI)
  • Total vector size: 4,541bp
  • V-I: 4,421bp
  • May be checked with:
  • 12/13, 2007

System 1: pOmpC + (TATA+INSA) + (TATB+INSB) + (RBS+CinR) + (RBS+HSL) + D-term

Phase 1 of system 1: RBS + CinR

RBS-CinR (plasmid).jpg
  • Insert size: 790bp
  • Total vector size: 2,943bp
  • V-I: 2,153bp
  • May be checked with: BsaBI

Phase 1 of system 1: RBS + HSL

RBS-HSL (plasmid).jpg
  • Insert size: 730bp
  • Total vector size: 2,883bp
  • V-I: 2,153bp
  • May be checked with: AgeI

Phase 1 of system 1: TATA + INSA = TATA_INSA

TATA INSA (insert).jpg
  • Insert size: 170bp
  • PCR product size: 209bp
  • May be checked with: RsaI
  • There is a extra SpeI site formed due to the addition of one extra stop codon

Phase 1 of system 1: TATB + INSB = TATB_INSB

TATB INSB (insert).jpg
  • Insert size: 220bp
  • PCR product size: 233bp
  • May be checked with AluI

Phase 2 of system 1: pOmpC + TATA_INSA

POmpC-TATA INSA (plasmid).jpg
  • Insert size: 292bp
  • Total vector size: 2,454bp
  • V-I: 2,162bp

Phase 2 of system 1: (RBS+CinR) + (RBS+HSL) = CinR+HSL

CinR-HSL (plasmid).jpg
  • Insert size: 1,524bp
  • Total vector size: 3,677bp
  • V-I: 2153bp

Phase 3 of system 1: pOmpC + TATA_INSA + TATB_INSB

POmpC-TATA INSA-TATB INSB (plasmid).jpg
  • Insert size: 502bp
  • Total vector size: 2,655bp
  • V-I: 2,153bp

Phase 3 of system 1: CinR+HSL + D-term = CinR+HSL+D-term

CinR-HSL-D-term (plasmid).jpg
  • Insert size: 1,633bp
  • Total vector size: 4,818bp
  • V-I: 3,185bp

Phase 4 of system 1: pOmpC + TATA_INSA + TATB_INSB + CinR+HSL+D-term

System I (plasmid).jpg
  • Insert size: 2,139bp
  • Total vector size: 4,292bp
  • V-I: 2,153bp

System 2: pCinRHSL+ OmpRBS + (TATD+IDE) + D-term

Phase 1 of system 2: TATD + IDE = TATD_IDE

TATD IDE (insert).jpg
  • Insert size: 3,190bp
  • PCR product size: 3,203bp

Phase 1 of system 2: pCinRHSL + OmpRBS

PCinRHSL-OmpRBS (plasmid).jpg
  • Insert size: 308bp
  • Total vector size: 2,461bp
  • V-I: 2,153bp

Phase 2 of system 2: pCinRHSL + OmpRBS + TATD_IDE

PCinRHSL-OmpRBS-TATD IDE (plasmid).jpg
  • Insert size: 3,488bp
  • Total vector size: 5,641bp
  • V-I: 2,153bp

Phase 3 of system 2: pCinRHSL + OmpRBS +  TATD_IDE + D-term

System 2 (plasmid).jpg
  • Insert size: 3,589bp
  • Total vector size: 5,742bp
  • V-I: 2,153bp

Basic Constructs

pOmpC in pSB1A2

POmpC (plasmid).jpg
  • Insert size: 118bp
  • Total vector size: 2,271bp
  • V-I: 2,153bp

pCinRHSL in pSB1A2

PCinRHSL (plasmid).jpg
  • Insert size: 235bp
  • Total vector size: 2,388bp
  • V-I: 2,153bp

RBS in pSB1A2

RBS (plasmid).jpg
  • BseR1 can be applied to check the insertion of RBS
  • Insert size: 22bp
  • Total vector size: 2,175bp
  • V-I: 2,153bp

D-term in pSB1AK3

D-term (plasmid).jpg
  • Insert size: 105bp
  • Total vector size: 3,290bp
  • V-I: 3,185bp

Back

Retrieved from "http://2007.igem.org/wiki/index.php/NYMU_Taipei/Construct"