Chiba/Goal

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[[Image:chiba_logo.png|center]]
[[Image:chiba_logo.png|center]]
__NOTOC__
__NOTOC__
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{| style="border:0;width:100%;" cellpadding="20px" cellspacing="0"
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{| style="border:0;width:100%;font-family:'Trebuchet MS'" cellpadding="20px" cellspacing="0"
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[[Chiba|Introduction]] | [[Chiba/Project_Design|Project Design]] ( [[Chiba/Engeneering_Flagella|1.Sticky Hands]] | [[Chiba/Communication|2.Communication]] | [[Chiba/Quorum_Sensing|3.Size Control]] ) |  [[Chiba/Making Marimo|Making Marimos]] |  [[Chiba/Goal|Our Goal]] || [[Chiba/Team_Members|Team Members]] | [[Chiba/Members_Only|メンバ連絡簿]]
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[[Chiba|Home]]<br>
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<span style="font-size:120%;font-weight:bold;">[[Chiba/Introduction|Introduction]] | [[Chiba/Project_Design|Project Design]] ( [[Chiba/Engeneering_Flagella|1.Affinity Tag]] | [[Chiba/Communication|2.Communication Module]] | [[Chiba/Quorum_Sensing|3.Size Control]] ) |  [[Chiba/Making Marimo|Making Marimos]] |  [[Chiba/Goal|Our Goal]]</span><br>
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[[Chiba/Acknowledgements|Acknowledgements]] | [[Chiba/Team_Members|Team Members]] | [http://chem.tf.chiba-u.jp/igem/ iGEM Chiba Website] | [[Chiba/Members_Only|メンバ連絡簿]]  
|}
|}
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==Our Goal==
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==Our Goal: Yet To Be Done==
As Final-Construction, we  will carry out four experiments.
As Final-Construction, we  will carry out four experiments.
*A test of adsorption between flagella
*A test of adsorption between flagella
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===A test of adsorption between flagella===
===A test of adsorption between flagella===
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[[Image:Imida2.gif|frame]]
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[[Image:Imida2.gif|frame|'''Fig. 28''' A test of adsorption between flagella]]
====Purpose====
====Purpose====
Confirm adsorption between senders and receivers with His-Tag.
Confirm adsorption between senders and receivers with His-Tag.
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senderとreceiver同士がHis-Tagで吸着しているかを確認するためのテスト
+
 
====Method====
====Method====
#Culture senders and receivers in a test tube.  
#Culture senders and receivers in a test tube.  
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#Drop senders into receivers and mix cobalt ion. <!-- They start to aggregate because of they have His-Tag. -->
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#Drop senders into receivers tube and mix cobalt ion. <!-- They start to aggregate because of they have His-Tag. -->
#<!-- After aggregation, we -->Divide it into two groups. One is added imidazole and the other is non imidazole. Inoculate them on the plates.
#<!-- After aggregation, we -->Divide it into two groups. One is added imidazole and the other is non imidazole. Inoculate them on the plates.
#Check the colony.  
#Check the colony.  
=====Prediction=====
=====Prediction=====
If succeeded, cultures which is added imidazole will form a indipendent colony of senders&receivers. The other (non imidazole) will form colonies of adsorbed senders and receivers.
If succeeded, cultures which is added imidazole will form a indipendent colony of senders&receivers. The other (non imidazole) will form colonies of adsorbed senders and receivers.
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1.Senderとreceiverをそれぞれ培養し、receiverの培養液の中に、senderを１滴加える。
 
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2.その中に金属イオンを加えると、senderとreceiverが鞭毛同士で吸着し始める。
 
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3.ある程度吸着したら、imidazolを加えたものとそうでないものをプレートにまく。
 
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4.imidazolを加えたものはばらばらのコロニーができ、imidazolなしのものは、senderとreceiverが
 
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  くっついているので、くっついたコロニーができる。
 
===A test to confirm a limit of size===
===A test to confirm a limit of size===
 +
<br>[[Image:ugen.gif|frame|'''Fig. 29''' A test to confirm a limit of size]]<br>
====Purpose====
====Purpose====
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The purpose of this test is to confirm that Marimo has a limit of size.  
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The purpose of this test is to confirm that Marimo has a limit of size on a plate.
-
 
+
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マリモを作る前の段階として、マリモの成長が有限の大きさで止まるか２次元で確認するためのテストである。
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====Method====
====Method====
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=====Prediction=====
=====Prediction=====
If succeeded,receivers which don’t express FliC (they didn’t sense AHL and express GFP) form colonies one by one. <br>And receivers expressed FliC (they sensed AHL and expressed GFP) form aggregated colonies.)
If succeeded,receivers which don’t express FliC (they didn’t sense AHL and express GFP) form colonies one by one. <br>And receivers expressed FliC (they sensed AHL and expressed GFP) form aggregated colonies.)
-
1.senderとreceiverを試験管でそれぞれ培養する。
 
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2.receiverをプレートに均一にまき、senderを真ん中に少量スポットし一晩培養する。
 
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3.senderの近く（GFPを発現している)、中間、遠く（GFPを発現していない）から数箇所ずつ菌をとってそれぞれ希釈液を作る。
 
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4.希釈した菌にCo2+を加えてプレートにまく。
 
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5.FliCを発現していなかったreceiverは、ばらばらのコロニーを作り、FliCを発現していたreceiverは塊になったコロニーを作る。
 
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<br>[[Image:ugen.gif]]<br>
 
-
 
-
 
-
 
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'''↑プレートにまく前にイミダゾールを入れる/入れないの条件の違いが書いてないよ！？by tashiro'''
 
-
 
-
　
 
===A test to form Marimo===
===A test to form Marimo===
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[[Image:Howto.gif|frame]]
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[[Image:Howto.gif|frame|'''Fig. 30''' A test to form Marimo]]
====Purpose====
====Purpose====
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Actually we make Marimos.
+
Actually we make Marimo.
*AHL diffuse fast because it is very small molecule.
*AHL diffuse fast because it is very small molecule.
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*Packed senders into a very thin capillary . AHL from it diffuse slowly and form concentrate gradients. Concentrate gradients enable Marimos to aggregate like a real ball.
+
*Packed senders into a very thin capillary . AHL from it diffuse slowly and form concentrate gradients. AHL gradients enable Marimos to aggregate like a real ball.
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(AHLはとても小さな分子で、自由度が高いので、拡散するのが早い。
+
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キャピラリーを利用することによって、senderが生産するAHLの拡散を遅くし、AHLの濃度勾配を作ることができる。濃度勾配によってより球体に近いマリモができる。)
+
====Method====
====Method====
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If succeeded,AHL from senders spreads.<br>
If succeeded,AHL from senders spreads.<br>
Receivers express GFP and FliC-His,and besides,bond with cobalt ions.
Receivers express GFP and FliC-His,and besides,bond with cobalt ions.
-
<br>Finnally,form marimos.<br><br><br><br><br>
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<br>Finnally,form marimos.<br><br><br><br><br><br><br><br><br>
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1.receiverとsenderを一晩培養する。Receiverの培養液の中にはコバルトイオンをまぜておく。
+
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2.キャピラリーでsenderを吸い取り、receiverの培養液の中に加える。
+
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3.Senderの出したAHLが拡散し始める。
+
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4.ReceiverはAHLを感じてGFPを発現する。また鞭毛を生やし、Ni２＋を介してHisタグ同士で吸着し始める。
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5.集合が成長してマリモになる。
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===A test of size control===
===A test of size control===
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[[Image:size.gif|frame]]
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[[Image:size.gif|frame|'''Fig. 31''' A test of size control]]
====Purpose====
====Purpose====
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Control marimo's size by changing　the amount of senders and receivers.
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Control marimo's size by changing　the ratio of amount of senders and receivers.
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senderとreceiverの量を変化させることによって、まりものサイズを制御するためのテスト。
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====Method====
====Method====
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#Observe marimo's size by changing the amount of receivers and their types.(const.senders)
#Observe marimo's size by changing the amount of receivers and their types.(const.senders)
#Observe marimo's size by changing the amount of senders.(const.receivers)
#Observe marimo's size by changing the amount of senders.(const.receivers)
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1.senderとreceiverを培養する。
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2.senderの量を一定にして、receiverの種類・量を変化させ、まりもの大きさの変化をみる。
+
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3.receiverの量を一定にして、senderの量を変化させ、マリモの大きさの変化をみる。
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=====Prediction=====
=====Prediction=====
Low concentration of senders or  receivers : Mini Marimo<br>
Low concentration of senders or  receivers : Mini Marimo<br>
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High concentration of senders or receivers : Big Marimo
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High concentration of senders or receivers : Big Marimo<br><br>
 +
 
 +
==In the Long Run==
 +
*Make Marimo which cross section is colorful. Receivers form layers and express various fluorescent proteins. When we cut Marimo, We will be able to observe beautiful gradation.
 +
*Bacteria Marimo grows like Real Marimo!
 +
Bacteria Marimo grows when it is lighted as if performing photosynthesis like natural Marimo.
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==Future==
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'''Light triggered marino growth'''<br>
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*Play catch with a big marimo.(サイズをもっと大きくしてマリモでキャッチボールがしたい)
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[[Image:Light sensing sender.jpg]]
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*Make marimo in liposome.(リポソームの中でマリモを作る)
+
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*Biochromatography using gelled cells.(ゲル化細胞を利用した、バイオクロマトグラフィ）
+
 +
This gene circuit contains light sensor gene. LuxI represses light senser.
 +
#Prepare mixture of Senders, Receivers(AHL -> FliC-His and GFP), and Co<sup>2+</sup>. 
 +
#Senders express FliC-His but do not synthesize AHL. Senders aggregate FliC-His and Co ions.
 +
#When the culture is lighted, senders express LuxI and synthesize AHL.
 +
#Receivers express FliC-His and GFP.
 +
#Receivers aggregate around the Senders core.
 +
Other than that, we have many FUTURE IDEAS (very far future...far enough we can leave CHIBA University happy) such as Marimo-mediated polous materials/ gels. Also presented are the other ways to make marimo in completely different strategies. To check those out, please visit our [http://chem.tf.chiba-u.jp/igem/ official website] (keep updated; never get frozen)
<!--ゲル化した細胞を利用した，バイオクロマトグラフフィ-->
<!--ゲル化した細胞を利用した，バイオクロマトグラフフィ-->
<!--collect ion ? by tahiro-->
<!--collect ion ? by tahiro-->
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[[Image:biochromatography.jpg|frame]]
 

Latest revision as of 06:43, 27 October 2007

Chiba logo.png

Home
Introduction | Project Design ( 1.Affinity Tag | 2.Communication Module | 3.Size Control ) | Making Marimos | Our Goal
Acknowledgements | Team Members | [http://chem.tf.chiba-u.jp/igem/ iGEM Chiba Website] | メンバ連絡簿


Our Goal: Yet To Be Done

As Final-Construction, we will carry out four experiments.

  • A test of adsorption between flagella
  • A test to confirm a limit of size
  • A test to form Marimo
  • A test of size control


A test of adsorption between flagella

Fig. 28 A test of adsorption between flagella

Purpose

Confirm adsorption between senders and receivers with His-Tag.

Method

  1. Culture senders and receivers in a test tube.
  2. Drop senders into receivers tube and mix cobalt ion.
  3. Divide it into two groups. One is added imidazole and the other is non imidazole. Inoculate them on the plates.
  4. Check the colony.
Prediction

If succeeded, cultures which is added imidazole will form a indipendent colony of senders&receivers. The other (non imidazole) will form colonies of adsorbed senders and receivers.

A test to confirm a limit of size


Fig. 29 A test to confirm a limit of size

Purpose

The purpose of this test is to confirm that Marimo has a limit of size on a plate.

Method

  1. Culture senders and receivers in a test tube.
  2. Inoculate receivers equally on the plate, and drop senders at the center of it.
  3. After over night,pick colonies which are near the senders (colonies express GFP), the end of the circle expressed GFP, and out of the green circle.
  4. Dilute them.
  5. Mix cobalt ion into dilutions and inoculate on the plates.
  6. Check the colony.
Prediction

If succeeded,receivers which don’t express FliC (they didn’t sense AHL and express GFP) form colonies one by one.
And receivers expressed FliC (they sensed AHL and expressed GFP) form aggregated colonies.)

A test to form Marimo

Fig. 30 A test to form Marimo

Purpose

Actually we make Marimo.

  • AHL diffuse fast because it is very small molecule.
  • Packed senders into a very thin capillary . AHL from it diffuse slowly and form concentrate gradients. AHL gradients enable Marimos to aggregate like a real ball.

Method

  1. Culture senders and receivers in each test tube and mix Cobalt ions in receiver's tube.
  2. Add senders to receivers with a capillary.
  3. Check Marimos.
Prediction

If succeeded,AHL from senders spreads.
Receivers express GFP and FliC-His,and besides,bond with cobalt ions.
Finnally,form marimos.








A test of size control

Fig. 31 A test of size control

Purpose

Control marimo's size by changing　the ratio of amount of senders and receivers.

Method

  1. Culture senders and receivers in each test tube.
  2. Observe marimo's size by changing the amount of receivers and their types.(const.senders)
  3. Observe marimo's size by changing the amount of senders.(const.receivers)
Prediction

Low concentration of senders or receivers : Mini Marimo
High concentration of senders or receivers : Big Marimo

In the Long Run

  • Make Marimo which cross section is colorful. Receivers form layers and express various fluorescent proteins. When we cut Marimo, We will be able to observe beautiful gradation.
  • Bacteria Marimo grows like Real Marimo!

Bacteria Marimo grows when it is lighted as if performing photosynthesis like natural Marimo.

Light triggered marino growth
Light sensing sender.jpg

This gene circuit contains light sensor gene. LuxI represses light senser.

  1. Prepare mixture of Senders, Receivers(AHL -> FliC-His and GFP), and Co2+.
  2. Senders express FliC-His but do not synthesize AHL. Senders aggregate FliC-His and Co ions.
  3. When the culture is lighted, senders express LuxI and synthesize AHL.
  4. Receivers express FliC-His and GFP.
  5. Receivers aggregate around the Senders core.

Other than that, we have many FUTURE IDEAS (very far future...far enough we can leave CHIBA University happy) such as Marimo-mediated polous materials/ gels. Also presented are the other ways to make marimo in completely different strategies. To check those out, please visit our [http://chem.tf.chiba-u.jp/igem/ official website] (keep updated; never get frozen)


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