Tokyo/Reference
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== General == | == General == | ||
| - | *Snyder, L., and Champness, W. Molecular Genetics of Bacteria. 2Rev Ed edition. American Society for Microbiology. 2002. | + | *Snyder, L., and Champness, W. ''Molecular Genetics of Bacteria. 2Rev Ed edition.'' American Society for Microbiology. 2002. |
==Lambda cI and cI regulated promoter== | ==Lambda cI and cI regulated promoter== | ||
| - | *Ptashne, M. (translator Horikoshi., M.) | + | *Ptashne, M. (translator Horikoshi., M.) ''Genetic Switch: Phage Lambda Revisited'' (Japanese translation). OHM. 2006. |
<br> | <br> | ||
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== Quorum sensing == | == Quorum sensing == | ||
| - | *Kaplan, H. B. and Greenberg, E. P. 1985. Diffusion of Autoinducer Is Involved in Regulation of the Vibrio fischeri Luminescence System. J. Bacteriol. Vol. 163, No. 3. 1210-1214. | + | *Kaplan, H. B. and Greenberg, E. P. 1985. Diffusion of Autoinducer Is Involved in Regulation of the Vibrio fischeri Luminescence System. ''J. Bacteriol''. Vol. '''163''', No. 3. 1210-1214. |
'''>''' The concentration of AHL inside and outside of a cell would be the same. | '''>''' The concentration of AHL inside and outside of a cell would be the same. | ||
<br><br> | <br><br> | ||
| - | *Stevens, A. M., Dolan M. K., and Greenberg E. P. 1994. Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region. | + | *Stevens, A. M., Dolan M. K., and Greenberg E. P. 1994. Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region. ''Proc. Natl. Acad. Sci. USA.'' Vol. '''91'''. 12619-12623 |
'''>''' Promoter for luxR and negative feedback regulation | '''>''' Promoter for luxR and negative feedback regulation | ||
== Plasmid copy number == | == Plasmid copy number == | ||
| - | *Atlung T., Christensen, B. B., and Hansen, F. G. 1999. Role of the Rom Protein in Copy Number Control of Plasmid pBR322 at different growth rate. Plasmid 41, 110–119 | + | *Atlung T., Christensen, B. B., and Hansen, F. G. 1999. Role of the Rom Protein in Copy Number Control of Plasmid pBR322 at different growth rate. ''Plasmid'' '''41''', 110–119. |
| - | + | '''>'''The ratio of pBR322 and pACYC184 kept in the same cell. | |
| - | + | ||
== Simulation == | == Simulation == | ||
*Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ.: 'Programmable cells: interfacing natural and engineered gene networks.' ''Proc Natl Acad Sci U S A.'', 2004 Jun 1, '''101'''(22):8414-9. | *Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ.: 'Programmable cells: interfacing natural and engineered gene networks.' ''Proc Natl Acad Sci U S A.'', 2004 Jun 1, '''101'''(22):8414-9. | ||
| - | |||
*Tian T, and Burrage K.: 'Stochastic models for regulatory networks of the genetic toggle switch.' ''Proc Natl Acad Sci U S A.'' 2006 May 30;'''103'''(22):8372-7. | *Tian T, and Burrage K.: 'Stochastic models for regulatory networks of the genetic toggle switch.' ''Proc Natl Acad Sci U S A.'' 2006 May 30;'''103'''(22):8372-7. | ||
| - | |||
*Garcia-Ojalvo J, Elowitz MB, and Strogatz SH. 'Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.': ''Proc Natl Acad Sci U S A.'' 2004 Jul 27;'''101'''(30):10955-60. | *Garcia-Ojalvo J, Elowitz MB, and Strogatz SH. 'Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.': ''Proc Natl Acad Sci U S A.'' 2004 Jul 27;'''101'''(30):10955-60. | ||
| - | |||
*Gardner TS, Cantor CR, and Collins JJ.: 'Construction of a genetic toggle switch in Escherichia coli.''':Nature''. 2000 Jan 20;'''403'''(6767):339-42. | *Gardner TS, Cantor CR, and Collins JJ.: 'Construction of a genetic toggle switch in Escherichia coli.''':Nature''. 2000 Jan 20;'''403'''(6767):339-42. | ||
| - | |||
*Tomioka R, Kimura H, J Kobayashi T, and Aihara K.: 'Multivariate analysis of noise in genetic regulatory networks.': ''J Theor Biol.'' 2004 Aug 21;'''229'''(4):501-21. | *Tomioka R, Kimura H, J Kobayashi T, and Aihara K.: 'Multivariate analysis of noise in genetic regulatory networks.': ''J Theor Biol.'' 2004 Aug 21;'''229'''(4):501-21. | ||
| + | *Vecchio DD., and Sontag ED.: 'Dynamics and Control of Synthetic Bio-molecular Networks': ''Proceedings of the 2007 American Control Conference.'' 2007 Jul 11 :1577-1588. | ||
Latest revision as of 02:41, 27 October 2007
Textbooks
General
- Snyder, L., and Champness, W. Molecular Genetics of Bacteria. 2Rev Ed edition. American Society for Microbiology. 2002.
Lambda cI and cI regulated promoter
- Ptashne, M. (translator Horikoshi., M.) Genetic Switch: Phage Lambda Revisited (Japanese translation). OHM. 2006.
Journals
Quorum sensing
- Kaplan, H. B. and Greenberg, E. P. 1985. Diffusion of Autoinducer Is Involved in Regulation of the Vibrio fischeri Luminescence System. J. Bacteriol. Vol. 163, No. 3. 1210-1214.
> The concentration of AHL inside and outside of a cell would be the same.
- Stevens, A. M., Dolan M. K., and Greenberg E. P. 1994. Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region. Proc. Natl. Acad. Sci. USA. Vol. 91. 12619-12623
> Promoter for luxR and negative feedback regulation
Plasmid copy number
- Atlung T., Christensen, B. B., and Hansen, F. G. 1999. Role of the Rom Protein in Copy Number Control of Plasmid pBR322 at different growth rate. Plasmid 41, 110–119.
>The ratio of pBR322 and pACYC184 kept in the same cell.
Simulation
- Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ.: 'Programmable cells: interfacing natural and engineered gene networks.' Proc Natl Acad Sci U S A., 2004 Jun 1, 101(22):8414-9.
- Tian T, and Burrage K.: 'Stochastic models for regulatory networks of the genetic toggle switch.' Proc Natl Acad Sci U S A. 2006 May 30;103(22):8372-7.
- Garcia-Ojalvo J, Elowitz MB, and Strogatz SH. 'Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.': Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10955-60.
- Gardner TS, Cantor CR, and Collins JJ.: 'Construction of a genetic toggle switch in Escherichia coli.':Nature. 2000 Jan 20;403(6767):339-42.
- Tomioka R, Kimura H, J Kobayashi T, and Aihara K.: 'Multivariate analysis of noise in genetic regulatory networks.': J Theor Biol. 2004 Aug 21;229(4):501-21.
- Vecchio DD., and Sontag ED.: 'Dynamics and Control of Synthetic Bio-molecular Networks': Proceedings of the 2007 American Control Conference. 2007 Jul 11 :1577-1588.
