Week 5

From 2007.igem.org

(Difference between revisions)
Line 43: Line 43:
::'''08/02/07'''
::'''08/02/07'''
*Today we do:
*Today we do:
-
-Miniprep of  J04500+C0051 (I763005);
+
-Miniprep of  [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)];
-Control digestion of 5 ul with Eco/Pst1;
-Control digestion of 5 ul with Eco/Pst1;
-
-A new B0015 digestion with Xba/Pst1;
+
-A new [http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;
-Digested run on electroforesi gel but we have problems with gel because we don’t see the band;
-Digested run on electroforesi gel but we have problems with gel because we don’t see the band;
-
-Band exstraction for B0015 e I763005;
+
-Band exstraction for [http://partsregistry.org/Part:BBa_B0015 B0015] e [http://partsregistry.org/Part:BBa_I763005 I763005];
-
-We observe thre aren’t colonies for C0012, but there are colonies for R0051 + I13507 (I763007), so we identify the correct ligation protocol;
+
-We observe thre aren’t colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], but there are colonies for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)], so we identify the correct ligation protocol;
-
- R0010, P0412, C0012 transformation;
+
- [http://partsregistry.org/Part:BBa_R0010 R0010], [http://partsregistry.org/Part:BBa_P0412 P0412], [http://partsregistry.org/Part:BBa_I13507 I13507] transformation;
-
-Inoculation in 5 ml for R0051 + I13507 and for J22101;
+
-Inoculation in 5 ml for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] and for [http://partsregistry.org/Part:BBa_J22101 J22101];
-
- R0051 + I13507 (I763007)  fluorescence test to verify if the filter for RFP is adapted, but it isn’t.
+
- [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] fluorescence test to verify if the filter for RFP is adapted, but it isn’t.

Revision as of 11:54, 28 August 2007

07/30/07
  • We control bacterial grew (link).
  • Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012] and [http://partsregistry.org/Part:BBa_J52034 J52034] and [http://partsregistry.org/Part:BBa_B0015 B0015].
  • We get along with the ligation [http://partsregistry.org/Part:BBa_R0051 R0051]+[http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 2 ul, insert 6 ul) and the ligation [http://partsregistry.org/Part:BBa_J04500 J04500]+ [http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)](vector 2 ul, insert 10 ul).



07/31/07
  • There isn’t any colony for [http://partsregistry.org/Part:BBa_C0012 C0012] , so we inoculate [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015] colony in 5 ml.
  • We strake on plates 30/07 ligations.
  • We get along with the [http://partsregistry.org/Part:BBa_J04431 J04431] fluorescence test:

-From the glycerol stock we sprout 1 ml at 37°C for 1 hour in agitation.

-We verify the OD and the fluorescence every 15 minutes. The fluorescence compare at the istance t=210min and at the OD=0.5.

  • At the end of this test we decide to repeat it to see if we can switch off the fluorescent cells with a major quantity of glucose to confirm our assumptions.

We will attend this test on 07/08.



08/01/07
  • We get along with:

-Miniprep of [http://partsregistry.org/Part:BBa_I52034 I52034] and [http://partsregistry.org/Part:BBa_B0015 B0015];

-Digestion of [http://partsregistry.org/Part:BBa_B0015 B0015] with Xba/Pst1;

-Digestion of [http://partsregistry.org/Part:BBa_I52034 I52034] with Spe/Pst1;

-Extraction from gel (we can’t see [http://partsregistry.org/Part:BBa_B0015 B0015]);

-[http://partsregistry.org/Part:BBa_R0015 R0015]+[http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)] ligation which doesn’t give colonies so we transform with the other 10 ul of ligation;

-[http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051][http://partsregistry.org/Part:BBa_I763005 (I763005)]ligation which gives colonies so we inoculate in 5ml;

-Transformation for [http://partsregistry.org/Part:BBa_C0012 C0012] (4ul) and for [http://partsregistry.org/Part:BBa_J22101 J22101] (2ul);

-A new [http://partsregistry.org/Part:BBa_R0051 R0051]+ [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] (vector 4ul, insert 8ul) ligation.



08/02/07
  • Today we do:

-Miniprep of [http://partsregistry.org/Part:BBa_J04500 J04500]+[http://partsregistry.org/Part:BBa_C0051 C0051] [http://partsregistry.org/Part:BBa_I763005 (I763005)];

-Control digestion of 5 ul with Eco/Pst1;

-A new [http://partsregistry.org/Part:BBa_B0015 B0015] digestion with Xba/Pst1;

-Digested run on electroforesi gel but we have problems with gel because we don’t see the band;

-Band exstraction for [http://partsregistry.org/Part:BBa_B0015 B0015] e [http://partsregistry.org/Part:BBa_I763005 I763005];

-We observe thre aren’t colonies for [http://partsregistry.org/Part:BBa_C0012 C0012], but there are colonies for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507][http://partsregistry.org/Part:BBa_I763007 (I763007)], so we identify the correct ligation protocol;

- [http://partsregistry.org/Part:BBa_R0010 R0010], [http://partsregistry.org/Part:BBa_P0412 P0412], [http://partsregistry.org/Part:BBa_I13507 I13507] transformation;

-Inoculation in 5 ml for [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] and for [http://partsregistry.org/Part:BBa_J22101 J22101];

- [http://partsregistry.org/Part:BBa_R0051 R0051] + [http://partsregistry.org/Part:BBa_I13507 I13507] [http://partsregistry.org/Part:BBa_I763007 (I763007)] fluorescence test to verify if the filter for RFP is adapted, but it isn’t.



08/03/07
  • We get along with:

-Miniprep for J22101 and for R0051+ I13507 (I763007);

- J22101 digestion with Xba/Pst1 ;

- Control digestion of R0051 + I13507 (I763007);

- J04500+C0051 (I763005) and B0015 and J22101 and R0051 + I13507 (I763007) run on electroforesi gel and J04500+C0051 (I763005) and J22101 estraction;

-Glycerol stock preparation;



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