Davidson Missouri W/Software

From 2007.igem.org

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* [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
* [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
* [[Davidson Missouri W/Web tool| Gene Splitter]] ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
* [[Davidson Missouri W/Web tool| Gene Splitter]] ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
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* Matlab programs: [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength], [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip], [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter].
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* Matlab programs:
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength],  
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip],  
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter],
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpVTgraph.m False positives for an 8 edge / 5 node graph],
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/davidson85Iweighter.m Counter Program for an 8 edge / 5 node graph],
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/adelman147.m Adelman's false positives with 14 edges / 7 nodes],
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#[http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpweighter.m Counter Program for Adelman's False Positives].

Revision as of 20:08, 10 October 2007

Home | Background Information | Current Project: Solving the Hamiltonian Path Problem in vivo | Mathematical Modeling | Gene Splitting | Controlling Expression | Traveling Salesperson Problem | Software | Resources and Citations


We have written computer software to help us with our projects.

  • [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
  • Gene Splitter ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
  • Matlab programs:
  1. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength],
  2. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip],
  3. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter],
  4. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpVTgraph.m False positives for an 8 edge / 5 node graph],
  5. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/davidson85Iweighter.m Counter Program for an 8 edge / 5 node graph],
  6. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/adelman147.m Adelman's false positives with 14 edges / 7 nodes],
  7. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpweighter.m Counter Program for Adelman's False Positives].
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