Davidson Missouri W/Software

From 2007.igem.org

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<center>[[Davidson Missouri W| <span style="color:red">Home</span>]] | [[Davidson Missouri W/Background Information| <span style="color:red">Background Information</span>]] | [[Davidson Missouri W/Solving the HPP in vivo| <span style="color:red">Current Project: Solving the Hamiltonian Path Problem ''in vivo''</span>]] | [[Davidson Missouri W/Mathematical Modeling| <span style="color:red">Mathematical Modeling</span>]] | [[Davidson Missouri W/Gene splitting| <span style="color:red"> Gene Splitting </span>]] | [[Davidson Missouri W/Controlling Expression| <span style="color:red"> Controlling Expression </span>]] | [[Davidson Missouri W/Traveling Salesperson Problem| <span style="color:red">Traveling Salesperson Problem</span> ]] | [[Davidson Missouri W/Software|<span style="color:black">Software</span>]] | [[Davidson Missouri W/Resources and Citations|<span style="color:red">Resources and Citations</span>]]</center>
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<center>[[Davidson Missouri W| <span style="color:red">Home</span>]] | [[Davidson Missouri W/Background Information| <span style="color:red">Background Information</span>]] | [[Davidson Missouri W/Solving the HPP in vivo| <span style="color:red">Current Project: Solving the Hamiltonian Path Problem ''in vivo''</span>]] | [[Davidson Missouri W/Mathematical Modeling| <span style="color:red">Mathematical Modeling</span>]] | [[Davidson Missouri W/Gene splitting| <span style="color:red"> Gene Splitting </span>]] | [[Davidson Missouri W/Traveling Salesperson Problem| <span style="color:red">Traveling Salesperson Problem</span> ]] | [[Davidson Missouri W/Software|<span style="color:black">Software</span>]] | [[Davidson Missouri W/Resources and Citations|<span style="color:red">Resources and Citations</span>]]</center>
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Revision as of 00:11, 14 October 2007

Home | Background Information | Current Project: Solving the Hamiltonian Path Problem in vivo | Mathematical Modeling | Gene Splitting | Traveling Salesperson Problem | Software | Resources and Citations


We have written computer software to help us with our projects.

  • [http://gcat.davidson.edu/IGEM06/oligo.html Oligo Cuts Optimization Program (Lance Harden, iGEM 2006)]
  • Gene Splitter ([http://gcat.davidson.edu/iGEM07/genesplitting_source.txt source])
  • Matlab programs:
  1. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fliplength.m FlipLength],
  2. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/pureflip.m PureFlip],
  3. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/biasweighter.m BiasWeighter],
  4. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpVTgraph.m False positives for an 8 edge / 5 node graph],
  5. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/davidson85Iweighter.m Counter Program for an 8 edge / 5 node graph],
  6. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/adelman147.m Adelman's false positives with 14 edges / 7 nodes],
  7. [http://gcat.davidson.edu/iGEM07/For_Missouri_Western/fpweighter.m Counter Program for Adelman's False Positives].
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