From 2007.igem.org

Revision as of 23:55, 26 October 2007

Simulation

A version of the [http://opnsrcbio.molsci.org/stochastirator/ Stochastirator], an open source ([http://www.gnu.org/licenses/old-licenses/gpl-2.0.html GPL version 2]) stochastic simulation program, provided by [http://weisswebserver.ee.princeton.edu/ Weiss lab], driven by [http://www.mathworks.com/ Mathworks] Matlab is used to model the state of our systems.

The corresponding source code, brief tutorial for use on our internal systems, and recent code snapshot is provided as an [http://weisswebserver.ee.princeton.edu/igem/2007/p/stoch_snapshot.zip archive], for reference. Although the core [http://opnsrcbio.molsci.org/stochastirator/ Stochastirator] code is licensed under [http://www.gnu.org/licenses/old-licenses/gpl-2.0.html GPL version 2], the additional interface is provided for reference purposes.

The figures corresponding to a basic version of our system are given below.

Figure 1. image: State variation with time for a normal cell with the basic version of our system.

Figure 2. image: State variation with time for a cancerous (MCF-7) cell with the basic version of our system. Note difference in vertical scaling.