From 2007.igem.org

Revision as of 01:30, 27 October 2007 (view source) Toyotaro (Talk | contribs) (→Purpose) ← Older edit		Revision as of 02:10, 27 October 2007 (view source) Hiroki (Talk | contribs) (→Future) Newer edit →
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	*Make marimo in liposome.(リポソームの中でマリモを作る)		*Make marimo in liposome.(リポソームの中でマリモを作る)
	*Biochromatography using gelled cells.(ゲル化細胞を利用した、バイオクロマトグラフィ）		*Biochromatography using gelled cells.(ゲル化細胞を利用した、バイオクロマトグラフィ）
		+	*Bacterial Marimo glows like Real Marimo!
		+	Bacterial Marimo glows when lighted as if performing photosynthesis like natural Marimo.
		+	[[Image:Light sensing sender.jpg]]
		+	This gene circuit contains light sensor gene. LuxI repressed light senser.
		+
		+	0.Prepare mixture of Senders, Receivers(AHL -> FliC-His and GFP), and Co<sup>2+</sup>.
		+	1.Senders express FliC-His but do not synthesize AHL. Senders aggregate FliC-His and Co ions.
		+	2.When the culture lighted, senders express LuxI and synthesize AHL.
		+	3.Receivers express FliC-His and GFP.
		+	4.Receivers aggregate around the Senders.
	<!--ゲル化した細胞を利用した，バイオクロマトグラフフィ-->		<!--ゲル化した細胞を利用した，バイオクロマトグラフフィ-->
	<!--collect ion ? by tahiro-->		<!--collect ion ? by tahiro-->
	[[Image:biochromatography.jpg|frame]]		[[Image:biochromatography.jpg|frame]]

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Revision as of 02:10, 27 October 2007

Introduction | Project Design ( 1.Sticky Hands | 2.Communication | 3.Size Control ) | Making Marimos | Our Goal || Team Members | メンバ連絡簿

Our Goal

As Final-Construction, we will carry out four experiments.

• A test of adsorption between flagella
• A test to confirm a limit of size
• A test to form Marimo
• A test of size control

A test of adsorption between flagella

Purpose

Confirm adsorption between senders and receivers with His-Tag.

Method

1. Culture senders and receivers in a test tube.
2. Drop senders into receivers tube and mix cobalt ion.
3. Divide it into two groups. One is added imidazole and the other is non imidazole. Inoculate them on the plates.
4. Check the colony.

Prediction

If succeeded, cultures which is added imidazole will form a indipendent colony of senders&receivers. The other (non imidazole) will form colonies of adsorbed senders and receivers.

A test to confirm a limit of size

Purpose

The purpose of this test is to confirm that Marimo has a limit of size on a plate.

Method

1. Culture senders and receivers in a test tube.
2. Inoculate receivers equally on the plate, and drop senders at the center of it.
3. After over night,pick colonies which are near the senders (colonies express GFP), the end of the circle expressed GFP, and out of the green circle.
4. Dilute them.
5. Mix cobalt ion into dilutions and inoculate on the plates.
6. Check the colony.

Prediction

If succeeded,receivers which don’t express FliC (they didn’t sense AHL and express GFP) form colonies one by one.
And receivers expressed FliC (they sensed AHL and expressed GFP) form aggregated colonies.)

A test to form Marimo

Purpose

Actually we make Marimos.

• AHL diffuse fast because it is very small molecule.
• Packed senders into a very thin capillary . AHL from it diffuse slowly and form concentrate gradients. AHL gradients enable Marimos to aggregate like a real ball.

Method

1. Culture senders and receivers in each test tube and mix Cobalt ions in receiver's tube.
2. Add senders to receivers with a capillary.
3. Check Marimos.

Prediction

If succeeded,AHL from senders spreads.
Receivers express GFP and FliC-His,and besides,bond with cobalt ions.
Finnally,form marimos.

A test of size control

Purpose

Control marimo's size by changing　the ratio of amount of senders and receivers.

Method

1. Culture senders and receivers in each test tube.
2. Observe marimo's size by changing the amount of receivers and their types.(const.senders)
3. Observe marimo's size by changing the amount of senders.(const.receivers)

Prediction

Low concentration of senders or receivers : Mini Marimo
High concentration of senders or receivers : Big Marimo

Future

• 説明がどれも不十分なので、もしどこが面白いのか充分に書けないのならば、この箇所はカットしましょう。byとよたろ
• Play catch with a big marimo.(サイズをもっと大きくしてマリモでキャッチボールがしたい)
• Make marimo in liposome.(リポソームの中でマリモを作る)
• Biochromatography using gelled cells.(ゲル化細胞を利用した、バイオクロマトグラフィ）
• Bacterial Marimo glows like Real Marimo!

Bacterial Marimo glows when lighted as if performing photosynthesis like natural Marimo.

This gene circuit contains light sensor gene. LuxI repressed light senser.

0.Prepare mixture of Senders, Receivers(AHL -> FliC-His and GFP), and Co2+.  
1.Senders express FliC-His but do not synthesize AHL. Senders aggregate FliC-His and Co ions.
2.When the culture lighted, senders express LuxI and synthesize AHL.
3.Receivers express FliC-His and GFP.
4.Receivers aggregate around the Senders.