NYMU Taipei/Paper
From 2007.igem.org
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Chemistry & Biodiversity. 4(4):603-621, 2007.</font></p> | Chemistry & Biodiversity. 4(4):603-621, 2007.</font></p> | ||
<p><font size="2">A bottom-up approach to gene regulation.<br /> | <p><font size="2">A bottom-up approach to gene regulation.<br /> | ||
| - | Nature | + | Nature 30: 979, 2006</font></p> |
<p><font size="2">Regulation of flagella.<br /> | <p><font size="2">Regulation of flagella.<br /> | ||
| - | Curr Opin Microbiol | + | Curr Opin Microbiol 6: 869, 2006</font></p> |
<p><font size="2">Regulatory dynamics of synthetic gene networks with positive feedback.<br /> | <p><font size="2">Regulatory dynamics of synthetic gene networks with positive feedback.<br /> | ||
| - | J Mol Biol | + | J Mol Biol 5: 239, 2006</font></p> |
<p><font size="2">Synthetic biology: new engineering rules for an emerging discipline.<br /> | <p><font size="2">Synthetic biology: new engineering rules for an emerging discipline.<br /> | ||
| - | Mol Syst Biol | + | Mol Syst Biol, 2006</font></p> |
<p><font size="2">A synthetic multicellular system for programmed pattern formation.<br /> | <p><font size="2">A synthetic multicellular system for programmed pattern formation.<br /> | ||
| - | Nature | + | Nature 30: 979, 2005</font></p> |
<p><font size="2">A synthetic gene-metabolic oscillator.<br /> | <p><font size="2">A synthetic gene-metabolic oscillator.<br /> | ||
| - | Nature | + | Nature 30: 979, 2005</font></p> |
<p><font size="2">Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.<br /> | <p><font size="2">Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.<br /> | ||
| - | Science | + | Science 29: 162, 2005</font></p> |
<p><font size="2">Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.<br /> | <p><font size="2">Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.<br /> | ||
| - | Nat Biotechnol | + | Nat Biotechnol 17: 721, 2005</font></p> |
<p><font size="2">Hysteresis in a synthetic mammalian gene network.<br /> | <p><font size="2">Hysteresis in a synthetic mammalian gene network.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2005</font></p> |
<p><font size="2">Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.<br /> | <p><font size="2">Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2005</font></p> |
<p><font size="2">Semi-synthetic mammalian gene regulatory networks.<br /> | <p><font size="2">Semi-synthetic mammalian gene regulatory networks.<br /> | ||
| - | Metab Eng | + | Metab Eng 3: 397, 2005</font></p> |
<p><font size="2">Transcriptional regulation and metabolism.<br /> | <p><font size="2">Transcriptional regulation and metabolism.<br /> | ||
| - | Biochem Soc Trans | + | Biochem Soc Trans 2: 579, 2005</font></p> |
<p><font size="2">Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system.<br /> | <p><font size="2">Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system.<br /> | ||
| - | Biotechnol Bioeng | + | Biotechnol Bioeng 2: 173, 2005</font></p> |
<p><font size="2">A network of orthogonal ribosome x mRNA pairs.<br /> | <p><font size="2">A network of orthogonal ribosome x mRNA pairs.<br /> | ||
| - | Nat Chem Biol | + | Nat Chem Biol, 2005</font></p> |
<p><font size="2">Programmed population control by cell-cell communication and regulated killing.<br /> | <p><font size="2">Programmed population control by cell-cell communication and regulated killing.<br /> | ||
| - | Nature | + | Nature 30: 979, 2004</font></p> |
<p><font size="2">Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.<br /> | <p><font size="2">Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.<br /> | ||
| - | Cell | + | Cell 26: 626, 2004</font></p> |
<p><font size="2">An engineered epigenetic transgene switch in mammalian cells.<br /> | <p><font size="2">An engineered epigenetic transgene switch in mammalian cells.<br /> | ||
| - | Nat Biotechnol | + | Nat Biotechnol 17: 721, 2004</font></p> |
<p><font size="2">Programmable cells: interfacing natural and engineered gene networks.<br /> | <p><font size="2">Programmable cells: interfacing natural and engineered gene networks.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2004</font></p> |
<p><font size="2">Design of artificial cell-cell communication using gene and metabolic networks.<br /> | <p><font size="2">Design of artificial cell-cell communication using gene and metabolic networks.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2004</font></p> |
<p><font size="2">Spatiotemporal control of gene expression with pulse-generating networks.<br /> | <p><font size="2">Spatiotemporal control of gene expression with pulse-generating networks.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2004</font></p> |
<p><font size="2">Optimizing genetic circuits by global sensitivity analysis.<br /> | <p><font size="2">Optimizing genetic circuits by global sensitivity analysis.<br /> | ||
| - | Biophys J | + | Biophys J 4: 463, 2004</font></p> |
| - | <p><font size="2">Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.<br /> | + | <p><font size="2">Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in ''Escherichia coli''.<br /> |
| - | Cell | + | Cell 26: 626, 2003</font></p> |
<p><font size="2">Combinatorial synthesis of genetic networks.<br /> | <p><font size="2">Combinatorial synthesis of genetic networks.<br /> | ||
| - | Science | + | Science 29: 162, 2002</font></p> |
<p><font size="2">Directed evolution of a genetic circuit.<br /> | <p><font size="2">Directed evolution of a genetic circuit.<br /> | ||
| - | Proc Natl Acad Sci U S A | + | Proc Natl Acad Sci U S A 10: 272, 2002</font></p> |
<p><font size="2">Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.<br /> | <p><font size="2">Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.<br /> | ||
| - | EMBO J | + | EMBO J 10: 456, 2001</font></p> |
<p><font size="2">A synthetic oscillatory network of transcriptional regulators.<br /> | <p><font size="2">A synthetic oscillatory network of transcriptional regulators.<br /> | ||
| - | Nature | + | Nature 30: 979, 2000</font></p> |
<p><font size="2">Engineering stability in gene networks by autoregulation.<br /> | <p><font size="2">Engineering stability in gene networks by autoregulation.<br /> | ||
| - | Nature | + | Nature 30: 979, 2000</font></p> |
<p><font size="2">Construction of a genetic toggle switch in Escherichia coli.<br /> | <p><font size="2">Construction of a genetic toggle switch in Escherichia coli.<br /> | ||
| - | Nature | + | Nature 30: 979, 2000</font></p> |
<p> </p> | <p> </p> | ||
<hr /> | <hr /> | ||
[https://2007.igem.org/Taipei Back] | [https://2007.igem.org/Taipei Back] | ||
Revision as of 11:11, 27 October 2007
A very expensive book on Synthetic Biology (US$2700 for single user license edition):
[http://www.bioportfolio.com/cgi-bin/acatalog/Synthetic_Biology__A_New_Paradigm_for_Biological_D.html Synthetic Biology: A New Paradigm for Biological Discovery]
Selected References (sorted by publication date in descending order)
Synthetic biology through the prism of scenarios.
Biotechnol J. 2007 Aug 17; [Epub ahead of print]
Robustness Analysis and Tuning of Synthetic Gene Networks.
Bioinformatics. 2007 Jul 30; [Epub ahead of print]
Combinatorial promoter design for engineering noisy gene expression.
Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12726-31.
Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.
Methods Enzymol. 2007;422:488-512.
Nano-enabled synthetic biology.
Mol Syst Biol. 2007;3:125. Epub 2007 Jul 10.
Synthetic biology: designs for life.
Nature. 2007 Jul 5;448(7149):32-33.
Bioengineering novel in vitro metabolic pathways using synthetic biology.
Curr Opin Microbiol. 2007 Jun;10(3):246-53.
The economics of synthetic biology.
Molecular Systems Biology. 3:117-120, 2007.
Rebuilding microbial genomes.
Bioessays. 29(6):580-590, 2007.
A synthetic biology challenge: making cells compute.
Molecular BioSystems. 3:343-353, 2007.
Guiding bacteria with small molecules and RNA.
Journal of the American Chemical Society. 129(21):6807-6811, 2007.
Designing biological systems.
Genes & Development. 21:242-254, 2007.
Chemical aspects of synthetic biology.
Chemistry & Biodiversity. 4(4):603-621, 2007.
A bottom-up approach to gene regulation.
Nature 30: 979, 2006
Regulation of flagella.
Curr Opin Microbiol 6: 869, 2006
Regulatory dynamics of synthetic gene networks with positive feedback.
J Mol Biol 5: 239, 2006
Synthetic biology: new engineering rules for an emerging discipline.
Mol Syst Biol, 2006
A synthetic multicellular system for programmed pattern formation.
Nature 30: 979, 2005
A synthetic gene-metabolic oscillator.
Nature 30: 979, 2005
Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.
Science 29: 162, 2005
Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.
Nat Biotechnol 17: 721, 2005
Hysteresis in a synthetic mammalian gene network.
Proc Natl Acad Sci U S A 10: 272, 2005
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.
Proc Natl Acad Sci U S A 10: 272, 2005
Semi-synthetic mammalian gene regulatory networks.
Metab Eng 3: 397, 2005
Transcriptional regulation and metabolism.
Biochem Soc Trans 2: 579, 2005
Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system.
Biotechnol Bioeng 2: 173, 2005
A network of orthogonal ribosome x mRNA pairs.
Nat Chem Biol, 2005
Programmed population control by cell-cell communication and regulated killing.
Nature 30: 979, 2004
Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.
Cell 26: 626, 2004
An engineered epigenetic transgene switch in mammalian cells.
Nat Biotechnol 17: 721, 2004
Programmable cells: interfacing natural and engineered gene networks.
Proc Natl Acad Sci U S A 10: 272, 2004
Design of artificial cell-cell communication using gene and metabolic networks.
Proc Natl Acad Sci U S A 10: 272, 2004
Spatiotemporal control of gene expression with pulse-generating networks.
Proc Natl Acad Sci U S A 10: 272, 2004
Optimizing genetic circuits by global sensitivity analysis.
Biophys J 4: 463, 2004
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
Cell 26: 626, 2003
Combinatorial synthesis of genetic networks.
Science 29: 162, 2002
Directed evolution of a genetic circuit.
Proc Natl Acad Sci U S A 10: 272, 2002
Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.
EMBO J 10: 456, 2001
A synthetic oscillatory network of transcriptional regulators.
Nature 30: 979, 2000
Engineering stability in gene networks by autoregulation.
Nature 30: 979, 2000
Construction of a genetic toggle switch in Escherichia coli.
Nature 30: 979, 2000
