From 2007.igem.org

Revision as of 10:29, 24 August 2007

Harvard University 2007 iGEM Team
	Students Ellenor Brown Stephanie Lo Alexander Pickett Sammy Sambu Kevin Shee Perry Tsai Shaunak Vankudre George Xu Education Advisor Tamara Brenner	Teaching Fellows Nicholas Guido Bill Senapedis Mike Strong Harris Wang Faculty Advisors Debra Auguste George Church Jagesh Shah William Shih Pamela Silver Alain Viel

The Harvard University 2007 iGEM Team

This year Harvard's team consisted of 8 undergraduate students, with backgrounds in molecular and cellular biology, biochemistry, and computer science. With the help of 6 faculty advisers and 4 teaching fellows, plus one education advisor, they devised and executed a single project with three subsections.

Cling-E. Coli

1. Bacterial Targeting
2. Quorum Sensing
3. Two-Component Systems

As of the end of the summer, enriched targeting was successfully demonstrated with known tagged sender and receiver cells. Separately, the quorum system with multiple types of promoters and reporters was well characterized. We are on our way toward a combined targeting-quorum system in the near future. In addition, targeting with random libraries to various substrates should also be achieved.

Eventually, our project may have applicability in medical imaging and localized drug synthesis and release. Theoretically, if our project is successful, we demonstrate that bacteria (or other microorganisms) can be targeted specifically to a certain tumor cell. At a certain density, quorum sensing may allow for the bacteria to emit a signal that can be detected by medical imaging devices. If the reporter gene encoded for drugs or vitamins, synthesis can also be evoked through enriched targeting. Furthermore, binding through a modified Fec system may allow for binding alone to transduce a signal and elicit a response in the cells.

Bacterial Targeting

The motivation for this part of the project was two-fold: first, to make bacteria adhere to targets with a high degree of specificity, and second, to transduce a signal upon adhesion to their targets. Initial targeting screens were done with histidine and strep2 tags to their known nickel and streptavidin targets; after characterization and high enrichment with these known substrates, random libraries were inserted into the outer membrane proteins OmpA and AIDA. As we proceed with this experiment, we hope to characterize sequences that lend specificity to calmodulin and EGF.

Quorum Sensing

Upon enrichment of e. coli to their targets, quorum sensing with a luxIR system (wildtype in Vibrio fischeri) was utilized. Quorum activity was measured through a reporter fluorescent protein (GFP and RFP). Two approaches were taken to quorum sensing: 1) a sender-receiver system in one cell, 2) senders and receivers in separate cells. We were able to demonstrate that the sender-receiver system was not self-inducing but acted with quorum activity. Quorum activity was also detected with the separate sender and receiver cells. By collaborating with the bacterial targeting subteam, we have evidence that tagged (targeted) senders and recievers are localizing to the beads; however, we are still in progress of characterizing the cell and bead density required to reach quorum levels.

Two-Component Systems

The Fec system of e. coli is unique in its wildtype ability to bind to a target and produce a reporting signal. By computationaly modifying the FecA receptor on the outer membrane of e. coli, and in colaboration with the bacterial targeting team, we hoped to bind specific targets and transduce a reporting signal. The goals for this subproject also include insertion of random peptide libraries into the FecA protein.

Click the picture, or click [http://openwetware.org/wiki/IGEM:Harvard here] for the more detailed Harvard iGEM 2007 wiki.