NYMU Taipei/Lab Notes/2007 9 27

From 2007.igem.org

(Difference between revisions)
Line 3: Line 3:
** PCR check using VF2, VR primers
** PCR check using VF2, VR primers
** PCR total 50 uL, 10 uL for GEL separation
** PCR total 50 uL, 10 uL for GEL separation
-
[[Image:NYMU Taipei 20070927 CinR-HSL-D-term plate culture test.jpg]]
 
** sample at each lane
** sample at each lane
*** 1Kb ladder
*** 1Kb ladder
Line 17: Line 16:
** extra band at 400 bp might be plasmid failed to be correctly ligated
** extra band at 400 bp might be plasmid failed to be correctly ligated
*** PCR product length without any insert = (3,189 - 3,049) + 176 = 316
*** PCR product length without any insert = (3,189 - 3,049) + 176 = 316
 +
[[Image:NYMU Taipei 20070927 CinR-HSL-D-term plate culture test.jpg]]
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* '''References'''
* '''References'''
** [http://partsregistry.org/Image:PsB1AK3_map.jpg vector map of pSB1AK3 and VF2 VR primers]
** [http://partsregistry.org/Image:PsB1AK3_map.jpg vector map of pSB1AK3 and VF2 VR primers]

Revision as of 09:20, 27 September 2007

  • CinR+HSL+D-term check
    • After re-culture in 20-block plate,randomly pick 6 blocks from CinR+HSL+D-term plate
    • PCR check using VF2, VR primers
    • PCR total 50 uL, 10 uL for GEL separation
    • sample at each lane
      • 1Kb ladder
      • block #1 (insert band appears)
      • block #2 (insert band appears, and one extra band around 400 bp)
      • block #3 (insert band appears)
      • block #4 (insert band appears)
      • block #5 (insert band does not appear, only band around 400 bp)
      • block #6 (insert band does not appear, only band around 400 bp)
    • expect results: one band at 1,623 bp is our insert
      • insert = RBS+CinR (2,843 - 2,053) + RBS+HSL (2,783 - 2,053) + D-term (3,266 - 3,163)
      • insert = 790 + 730 + 103 = 1,623
    • extra band at 400 bp might be plasmid failed to be correctly ligated
      • PCR product length without any insert = (3,189 - 3,049) + 176 = 316

NYMU Taipei 20070927 CinR-HSL-D-term plate culture test.jpg


  • References
    • [http://partsregistry.org/Image:PsB1AK3_map.jpg vector map of pSB1AK3 and VF2 VR primers]