Template:BerkiGEM2007 SamanthaSequencingFiles
From 2007.igem.org
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|SIL174||9-21||pBca9145-I716481||3||ca998||only BglII||[[BerkiGEM2007-Sequencing-SIL174 | SIL174]] | |SIL174||9-21||pBca9145-I716481||3||ca998||only BglII||[[BerkiGEM2007-Sequencing-SIL174 | SIL174]] | ||
|- | |- | ||
| - | |SIL175|| | + | |SIL175||10-02||pBca9145-I716451||1||ca56||???||[[BerkiGEM2007-Sequencing-SIL175 | SIL175]] |
|} | |} | ||
Revision as of 22:32, 2 October 2007
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL001 | 6-6 | pBca1101-I716201 | 1 | ca998 | wrong, nonsense | SIL001 |
| SIL002 | 6-6 | pBca1101-I716202 | 1 | ca998 | wrong | SIL002 |
| SIL003 | 6-6 | pBca1101-I716202 | 2 | ca998 | wrong | SIL003 |
| SIL004 | 6-6 | pBca1101-I716203 | 1 | ca998 | wrong | SIL004 |
| SIL005 | 6-6 | pBca1101-I716203 | 2 | ca998 | wrong | SIL005 |
| SIL006 | 6-6 | pBca9145-I716204 | 1 | ca998 | perfect | SIL006 |
| SIL007 | 6-6 | pBca9145-I716204 | 2 | ca998 | perfect | SIL007 |
| SIL008 | 6-6 | pBca9145-I716205 | 1 | ca998 | good | SIL008 |
| SIL009 | 6-6 | pBca9145-I716205 | 2 | ca998 | wrong, no terminator | SIL009 |
| SIL010 | 6-6 | pBca9145-I716206 | 1 | ca998 | perfect | SIL010 |
| SIL011 | 6-6 | pBca9145-I716206 | 2 | ca998 | perfect | SIL011 |
| SIL012 | 6-8 | pBca9145-I716207 | 1 | ca998 | perfect | SIL012 |
| SIL013 | 6-8 | pBca9145-I716207 | 2 | ca998 | good | SIL013 |
| SIL014 | 6-8 | pBca9145-I716208 | 1 | ca998 | perfect | SIL014 |
| SIL015 | 6-8 | pBca9145-I716208 | 2 | ca998 | wrong, [lox] only | SIL015 |
| SIL016 | 6-9 | pBca9145-I716209 | 1 | ca998 | good but not long enough | SIL016 |
| SIL017 | 6-9 | pBca9145-I716209 | 2 | ca998 | good but not long enough | SIL017 |
| SIL018 | 6-9 | pBca9145-I716210 | 1 | ca998 | good | SIL018 |
| SIL019 | 6-9 | pBca9145-I716210 | 2 | ca998 | perfect | SIL019 |
| SIL020 | 6-9 | pBca9145-I716211 | 1 | ca998 | good but not long enough | SIL020 |
| SIL021 | 6-9 | pBca9145-I716211 | 2 | ca998 | good but not long enough | SIL021 |
| SIL022 | 6-9 | pBca9145-I716212 | 1 | ca998 | nope, still ATG start codon | SIL022 |
| SIL023 | 6-9 | pBca9145-I716212 | 2 | ca998 | nope, still ATG start codon | SIL023 |
| SIL024 | 6-9 | pBca9145-I716213 | 1 | ca998 | good but not long enough | SIL024 |
| SIL025 | 6-9 | pBca9145-I716213 | 2 | ca998 | good but not long enough | SIL025 |
Contents |
Start 26
| SIL026 | 6-11 | pBca9145-I716209 | 1 | G01001 | perfect | SIL026 |
| SIL027 | 6-11 | pBca9145-I716209 | 2 | G01001 | perfect | SIL027 |
| SIL028 | 6-11 | pBca9145-I716211 | 1 | G01001 | perfect | SIL028 |
| SIL029 | 6-11 | pBca9145-I716211 | 2 | G01001 | 1bp deletion | SIL029 |
| SIL030 | 6-11 | pBca9145-I716213 | 2 | G01001 | perfect | SIL030 |
| SIL031 | 6-12 | pBca9145-I716214 | 1 | ca998 | bad read | SIL031 |
| SIL032 | 6-12 | pBca9145-I716214 | 2 | ca998 | good | SIL032 |
| SIL033 | 6-12 | pBca9145-I716215 | 1 | ca998 | bad read | SIL033 |
| SIL034 | 6-12 | pBca9145-I716215 | 2 | ca998 | good | SIL034 |
| SIL035 | 6-13 | pBca9145-I716212 | 1 | ca998 | bad read | SIL035 |
| SIL036 | 6-13 | pBca9145-I716212 | 2 | ca998 | wrong - still ATG start | SIL036 |
| SIL037 | 6-15 | pBca9145-I716216 | 1 | ca998 | wrong - cassette only | SIL037 |
| SIL038 | 6-15 | pBca9145-I716220 | 1 | ca998 | perfect | SIL038 |
| SIL039 | 6-15 | pBca9145-I716221 | 1 | ca998 | perfect | SIL039 |
| SIL040 | 6-15 | pBca9145-I716222 | 1 | ca998 | perfect | SIL040 |
| SIL041 | 6-15 | pBca9145-I716223 | 1 | ca998 | wrong - missing cassette | SIL041 |
| SIL042 | 6-19 | pBca9145-I716212 | 1 | ca998 | good | SIL042 |
| SIL043 | 6-19 | pBca9145-I716216 | 2 | ca998 | perfect! finally! | SIL043 |
| SIL044 | 6-20 | pBca9145-I716216 | 2 | ca998 | bad read | SIL044 |
| SIL045 | 6-20 | pBca9145-I716216 | 3 | ca998 | bad read - only Cre though | SIL045 |
| SIL046 | 6-20 | pBca9145-I716217 | 1 | ca998 | bad read - only Cre though | SIL046 |
| SIL047 | 6-20 | pBca9145-I716217 | 2 | ca998 | weird - missing a lox site | SIL047 |
| SIL048 | 6-20 | pBca9145-I716218 | 1 | ca998 | messy but should be right | SIL048 |
| SIL049 | 6-20 | pBca9145-I716218 | 2 | ca998 | perfect | SIL049 |
| SIL050 | 6-20 | pBca9145-I716219 | 1 | ca998 | perfect | SIL050 |
Start 51
| SIL051 | 6-20 | pBca9145-I716219 | 2 | ca998 | perfect | SIL051 |
| SIL052 | 6-20 | pBca9145-I716222 | 2 | ca998 | wrong | SIL052 |
| SIL053 | 6-20 | pBca9145-I716222 | 3 | ca998 | perfect | SIL053 |
| SIL054 | 6-20 | pBca9145-I716223 | 1 | ca998 | BAD! previously thought to be good | SIL054 |
| SIL055 | 6-20 | pBca9145-I716223 | 4 | ca998 | perfect | SIL055 |
| SIL056 | 6-26 | pBca9145-I716216 | R1 | ca998 | no ceaB | SIL056 |
| SIL057 | 6-26 | pBca9145-I716217 | R4 | ca998 | no ceaB | SIL057 |
| SIL058 | 6-26 | pBca9145-I716217 | R5 | ca998 | no ceaB | SIL058 |
| SIL059 | 6-26 | pBca9145-I716224 | 1 | ca998 | perfect | SIL059 |
| SIL060 | 6-26 | pBca9145-I716225 | 2 | ca998 | perfect | SIL060 |
| SIL061 | 6-26 | pBca9145-I716226 | 3 | ca998 | perfect | SIL061 |
| SIL062 | 7-02 | pBca9145-I716216 | ddbs4 | ca998 | possible point mutatiion | SIL062 |
| SIL063 | 7-02 | pBca9145-I716217 | dbbs3 | ca998 | perfect | SIL063 |
| SIL064 | 7-11 | pBca9145-I716401 | 1 | ca998 | still has CamR -no pbad | SIL064 |
| SIL065 | 7-11 | pBca9145-I716402 | 1 | ca998 | perfect | SIL065 |
| SIL066 | 7-11 | pBca9145-I716403 | 1 | ca998 | perfect | SIL066 |
| SIL067 | 7-11 | pBca9145-I716404 | 1 | ca998 | perfect | SIL067 |
| SIL068 | 7-11 | pBca9145-I716405 | 1 | ca998 | perfect | SIL068 |
| SIL069 | 7-11 | pBca9145-I716406 | 1 | ca998 | looks good - but mixed template | SIL069 |
| SIL070 | 7-11 | pBca9145-I716407 | 1 | ca998 | badly mixed template | SIL070 |
| SIL071 | 7-11 | pBca9145-I716408 | 1 | ca998 | good | SIL071 |
| SIL072 | 7-11 | pBca9145-I716409 | 1 | ca998 | badly mixed template | SIL072 |
| SIL073 | 7-11 | pBca9145-I716410 | 1 | ca998 | still has CamR - no pBad | SIL073 |
| SIL074 | 7-11 | pBca9145-I716411 | 1 | ca998 | perfect | SIL074 |
| SIL075 | 7-11 | pBca9145-I716412 | 1 | ca998 | perfect | SIL075 |
Start 76
| SIL076 | 7-11 | pBca9145-I716413 | 1 | ca998 | good | SIL076 |
| SIL077 | 7-11 | pBca9145-I716414 | 1 | ca998 | good | SIL077 |
| SIL078 | 7-11 | pBca9145-I716415 | 1 | ca998 | looks good, but a little mixed read | SIL078 |
| SIL079 | 7-17 | pBca9145-I716401 | 2 | ca998 | perfect | SIL079 |
| SIL080 | 7-17 | pBca9145-I716407 | 2 | ca998 | perfect | SIL080 |
| SIL081 | 7-17 | pBca9145-I716409 | 2 | ca998 | mixed-can see part of pbad | SIL081 |
| SIL082 | 7-17 | pBca9145-I716410 | 2 | ca998 | perfect | SIL082 |
| SIL083 | 7-17 | pBca9145-I716416 | 1 | ca998 | CamR instead of pbad | SIL083 |
| SIL084 | 7-17 | pBca9145-I716417 | 1 | ca998 | good | SIL084 |
| SIL085 | 7-17 | pBca9145-I716418 | 1 | ca998 | CamR instead of pbad | SIL085 |
| SIL086 | 7-17 | pBca9145-I716419 | 1 | ca998 | CamR instead of pbad | SIL086 |
| SIL087 | 7-17 | pBca9145-I716420 | 1 | ca998 | mixed template - no match | SIL087 |
| SIL088 | 7-17 | pBca9145-I716421 | 1 | ca998 | CamR instead of pbad | SIL088 |
| SIL089 | 7-17 | pBca9145-I716422 | 1 | ca998 | perfect | SIL089 |
| SIL090 | 7-17 | pBca9145-I716422 | 4 | ca998 | perfect | SIL090 |
| SIL091 | 7-17 | pBca9145-I716423 | 1 | ca998 | perfect | SIL091 |
| SIL092 | 7-17 | pBca9145-I716423 | 3 | ca998 | perfect | SIL092 |
| SIL093 | 7-20 | pBca9145-I716408C | 1 | ca998 | recombination | SIL093 |
| SIL094 | 7-20 | pBca9145-I716408E | 1 | ca998 | recombination | SIL094 |
| SIL095 | 7-20 | pBca9145-I716408C | 1 | G01001 | recombination | SIL095 |
| SIL096 | 7-20 | pBca9145-I716408E | 1 | G01001 | recombination | SIL096 |
| SIL097 | 7-26 | pBca1101-I716436 | 2 | ca998 | weak signal | SIL097 |
| SIL098 | 7-26 | pBca1101-I716436 | 4 | ca998 | perfect | SIL098 |
| SIL099 | 7-26 | pBca9145-I716437 | 1 | ca998 | perfect | SIL099 |
| SIL100 | 7-26 | pBca9145-I716437 | 2 | ca998 | perfect | SIL100 |
Start 101
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL101 | 7-31 | Bca1101-I716438 | 1 | ca998 | only TT | SIL101 |
| SIL102 | 7-31 | Bca9145-I716439 | 1 | ca998 | only TT | SIL102 |
| SIL103 | 7-31 | Bca9145-I716439 | 2 | ca998 | wrong | SIL103 |
| SIL104 | 7-31 | Bca9145-I716440 | 1 | ca998 | good but need G01001 too | SIL104 |
| SIL105 | 7-31 | Bca9145-I716441 | 1 | ca56 | perfect | SIL105 |
| SIL106 | 7-31 | Bca9145-I716441 | 2 | ca56 | perfect | SIL106 |
| SIL107 | 8-3 | Bca1101-I716438 | 1 | ca998 | good-needs reverse | SIL107 |
| SIL108 | 8-3 | Bca1101-I716438 | 4 | ca998 | good-needs reverse | SIL108 |
| SIL109 | 8-3 | Bca9145-I716439 | 1 | ca998 | good-needs reverse | SIL109 |
| SIL110 | 8-3 | Bca9145-I716439 | 3 | ca998 | good-needs reverse | SIL110 |
| SIL111 | 8-3 | Bca9145-I716442 | 2 | ca56 | perfect | SIL111 |
| SIL112 | 8-3 | Bca9145-I716442 | 3 | ca56 | perfect | SIL112 |
| SIL113 | 8-7 | Bca9145-I716443 | 2 | G01001 | no TT | SIL113 |
| SIL114 | 8-7 | Bca9145-I716443 | 3 | G01001 | no TT | SIL114 |
| SIL115 | 8-7 | Bca9145-I716444 | 2 | G01001 | no TT | SIL115 |
| SIL116 | 8-7 | Bca9145-I716444 | 4 | G01001 | no TT | SIL116 |
| SIL117 | 8-7 | Bca9145-I716438 | 1 | G01001 | no TT | SIL117 |
| SIL118 | 8-7 | Bca9145-I716438 | 4 | G01001 | no TT | SIL118 |
| SIL119 | 8-7 | Bca9145-I716439 | 1 | G01001 | no TT | SIL119 |
| SIL120 | 8-7 | Bca9145-I716439 | 3 | G01001 | no TT | SIL120 |
| SIL121 | 8-7 | Bca9145-I716449 | 1 | ca56 | perfect | SIL121 |
| SIL122 | 8-7 | Bca9145-I716449 | 2 | ca56 | perfect | SIL122 |
| SIL123 | 8-7 | Bca9145-I716450 | 1 | ca56 | perfect | SIL123 |
| SIL124 | 8-7 | Bca9145-I716450 | 2 | ca56 | perfect | SIL124 |
| SIL125 | 8-7 | Bca9145-I716455 | 1 | ca56 | ??? | SIL125 |
Start 126
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL126 | 8-7 | Bca9145-I716456 | 1 | ca56 | ??? | SIL126 |
| SIL127 | 8-7 | Bca9145-I716457 | 1 | ca56 | ??? | SIL127 |
| SIL128 | 8-7 | Bca9145-I716458 | 1 | ca56 | ??? | SIL128 |
| SIL129 | 8-14 | Bca9145-I716438 | 1 | G01001 | perfect | SIL129 |
| SIL130 | 8-14 | Bca9145-I716438 | 3 | G01001 | perfect | SIL130 |
| SIL131 | 8-14 | Bca9145-I716439 | 1 | G01001 | perfect | SIL131 |
| SIL132 | 8-14 | Bca9145-I716439 | 2 | G01001 | perfect | SIL132 |
| SIL133 | 8-20 | Bca9145-Bca1149 | 1 | ca998 | perfect | SIL133 |
| SIL134 | 8-20 | Bca9145-Bca1149 | 2 | ca998 | perfect | SIL134 |
| SIL135 | 8-20 | Bca9145-I716445 | 1 | ca998 | only lox site | SIL135 |
| SIL136 | 8-20 | Bca9145-I716445 | 2 | ca998 | only lox site | SIL136 |
| SIL137 | 8-20 | Bca9145-I716446 | 1 | ca998 | only lox site | SIL137 |
| SIL138 | 8-20 | Bca9145-I716446 | 2 | ca998 | only lox site | SIL138 |
| SIL139 | 8-20 | Bca9145-I716465 | 3 | ca998 | bad read | SIL139 |
| SIL140 | 8-20 | Bca9145-I716465 | 4 | ca998 | bad read | SIL140 |
| SIL141 | 8-20 | Bca9145-I716466 | 3 | ca998 | completely wrong | SIL141 |
| SIL142 | 8-20 | Bca9145-I716466 | 4 | ca998 | completely wrong | SIL142 |
| SIL143 | 8-20 | Bca9145-I716443 | 1 | G01001 | perfect | SIL143 |
| SIL144 | 8-20 | Bca9145-I716443 | 2 | G01001 | perfect | SIL144 |
| SIL145 | 8-20 | Bca9145-I716444 | 1 | G01001 | perfect | SIL145 |
| SIL146 | 8-20 | Bca9145-I716444 | 2 | G01001 | perfect | SIL146 |
| SIL147 | 9-2 | Bca9145-I716445 | 2 | ca998 | wrong | SIL147 |
| SIL148 | 9-2 | Bca9145-I716445 | 3 | ca998 | wrong | SIL148 |
| SIL149 | 9-2 | Bca9145-I716446 | 2 | ca998 | wrong | SIL149 |
| SIL150 | 9-2 | Bca9145-I716446 | 3 | ca998 | wrong | SIL150 |
Start 151
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL151 | 9-10-07 | pBca9145-I716445 | 3 | ca998 | lox only | SIL151 |
| SIL152 | 9-10-07 | pBca9145-I716445 | 4 | ca998 | lox only | SIL152 |
| SIL153 | 9-10-07 | pBca9145-I716445 | 5 | ca998 | lox only | SIL153 |
| SIL154 | 9-10-07 | pBca9145-I716446 | 1 | ca998 | lox only | SIL154 |
| SIL155 | 9-10-07 | pBca9145-I716446 | 3 | ca998 | lox only | SIL155 |
| SIL156 | 9-10-07 | pBca9145-I716446 | 5 | ca998 | lox only | SIL156 |
| SIL157 | 9-21 | pBca1101-I716476 | 1 | ca998 | good | SIL157 |
| SIL158 | 9-21 | pBca1101-I716476 | 2 | ca998 | good | SIL158 |
| SIL159 | 9-21 | pBca1101-I716476 | 3 | ca998 | good | SIL159 |
| SIL160 | 9-21 | pBca1101-I716477 | 1 | ca998 | good | SIL160 |
| SIL161 | 9-21 | pBca1101-I716477 | 2 | ca998 | good | SIL161 |
| SIL162 | 9-21 | pBca1101-I716477 | 3 | ca998 | good | SIL162 |
| SIL163 | 9-21 | pBca9145-I716478 | 1 | ca998 | no ceab | SIL163 |
| SIL164 | 9-21 | pBca9145-I716478 | 2 | ca998 | no ceab | SIL164 |
| SIL165 | 9-21 | pBca9145-I716478 | 3 | ca998 | no ceab | SIL165 |
| SIL166 | 9-21 | pBca9145-I716479 | 1 | ca998 | good | SIL166 |
| SIL167 | 9-21 | pBca9145-I716479 | 2 | ca998 | good | SIL167 |
| SIL168 | 9-21 | pBca9145-I716479 | 3 | ca998 | good | SIL168 |
| SIL169 | 9-21 | pBca9145-I716480 | 1 | ca998 | good | SIL169 |
| SIL170 | 9-21 | pBca9145-I716480 | 2 | ca998 | good | SIL170 |
| SIL171 | 9-21 | pBca9145-I716480 | 3 | ca998 | good | SIL171 |
| SIL172 | 9-21 | pBca9145-I716481 | 1 | ca998 | only BglII | SIL172 |
| SIL173 | 9-21 | pBca9145-I716481 | 2 | ca998 | only BglII | SIL173 |
| SIL174 | 9-21 | pBca9145-I716481 | 3 | ca998 | only BglII | SIL174 |
| SIL175 | 10-02 | pBca9145-I716451 | 1 | ca56 | ??? | SIL175 |
Start 176
| Sample | Date (2007) | Plasmid | Clone | Primer | Result | File Link |
| SIL176 | ??? | ??? | ??? | ??? | ??? | SIL176 |
| SIL177 | ??? | ??? | ??? | ??? | ??? | SIL177 |
| SIL178 | ??? | ??? | ??? | ??? | ??? | SIL178 |
| SIL179 | ??? | ??? | ??? | ??? | ??? | SIL179 |
| SIL180 | ??? | ??? | ??? | ??? | ??? | SIL180 |
| SIL181 | ??? | ??? | ??? | ??? | ??? | SIL181 |
| SIL182 | ??? | ??? | ??? | ??? | ??? | SIL182 |
| SIL183 | ??? | ??? | ??? | ??? | ??? | SIL183 |
| SIL184 | ??? | ??? | ??? | ??? | ??? | SIL184 |
| SIL185 | ??? | ??? | ??? | ??? | ??? | SIL185 |
| SIL186 | ??? | ??? | ??? | ??? | ??? | SIL186 |
| SIL187 | ??? | ??? | ??? | ??? | ??? | SIL187 |
| SIL188 | ??? | ??? | ??? | ??? | ??? | SIL188 |
| SIL189 | ??? | ??? | ??? | ??? | ??? | SIL189 |
| SIL190 | ??? | ??? | ??? | ??? | ??? | SIL190 |
| SIL191 | ??? | ??? | ??? | ??? | ??? | SIL191 |
| SIL192 | ??? | ??? | ??? | ??? | ??? | SIL192 |
| SIL193 | ??? | ??? | ??? | ??? | ??? | SIL193 |
| SIL194 | ??? | ??? | ??? | ??? | ??? | SIL194 |
| SIL195 | ??? | ??? | ??? | ??? | ??? | SIL195 |
| SIL196 | ??? | ??? | ??? | ??? | ??? | SIL196 |
| SIL197 | ??? | ??? | ??? | ??? | ??? | SIL197 |
| SIL198 | ??? | ??? | ??? | ??? | ??? | SIL198 |
| SIL199 | ??? | ??? | ??? | ??? | ??? | SIL199 |
| SIL200 | ??? | ??? | ??? | ??? | ??? | SIL200 |
