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-	Of course, we ourselves used our own RBS and terminator.	+	Of course, we ourselves used RBS B0034 and terminator B0015.
	[[Image:USTC WithRBS.png|512px]]		[[Image:USTC WithRBS.png|512px]]

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Revision as of 12:13, 22 October 2007

Conductance Adjusting

As we mentioned above, the noninterference Repressor/Operator pairs can play good roles as “wires”. Of course, different pairs have different strength of bond, so these wires will transfer different intensity of signals from upstream components to downstream ones, even though conducting the same two components. In qualitative or semiquantitative experiments, this will not be a serious problem, but we must solve it for experiments that are more precise.

We all know that different promoters can initialize transcription strongly or weakly ([http://partsregistry.org/Part:BBa_J23100 Parts:BBa_J23100 and its family]). On the other hand, various RBS may lead to various efficiency of translation ([http://partsregistry.org/Part:BBa_J61100 Parts:BBa_J61100 and its family] and [http://partsregistry.org/JCA_Arkin_RBSFamilyPart2 JCA_Arkin_RBS Family]). Naturally, we will think of these two approaches: using different promoters or using different RBS. However, according to the idea of “modularization”, we don’t want to modify promoters casually because these promoters are the kernel elements of our logic components. Anyway, we can modify the other elements around this kernel, i.e. the RBS and operators. Let’s imagine the wires--every wire has two ends, and each of our Repressor/Operator pairs is a monodirectional wire. The beginning end is the RBS that activates the translation of this repressor protein, and the tail end is the operator that accesses the repression of this protein.

To modify the RBS or operators is just like changing the conductance of actual wires’ ends, so we call it “Conductance Adjusting”:

Using different RBS

Registry of Standard Biological Parts have provided many kinds of RBS whose activities distributes within a wide range ([http://partsregistry.org/Part:BBa_J61100 Parts:BBa_J61100 and its family] and [http://partsregistry.org/JCA_Arkin_RBSFamilyPart2 JCA_Arkin_RBS Family]). We’ve submitted our repressor protein coding parts without RBS or terminator, so anyone can assemble them with appropriate RBS to get applicable efficiency of translation.

Of course, we ourselves used RBS B0034 and terminator B0015.