Paris/Sources
From 2007.igem.org
(Difference between revisions)
Line 2: | Line 2: | ||
=Cell auto= | =Cell auto= | ||
- | < | + | <code><pre> |
!include "gbviewOutput.mgs" ;; | !include "gbviewOutput.mgs" ;; | ||
Line 73: | Line 73: | ||
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;; | g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;; | ||
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;; | g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;; | ||
- | evol[iter=1000,interlude=GBVexport((\v.("DAPe = " + (12 * v.DAPe ) + if BactS(v) then ", bactS= 255" else ", bactG = 255" | + | evol[iter=1000,interlude=GBVexport((\v.("DAPe = "+(12 * v.DAPe )+if BactS(v) then ", bactS= 255" else ", bactG = 255"fi )))](g) ;; |
- | </ | + | </pre></code> |
Revision as of 13:49, 24 October 2007
Cell auto
!include "gbviewOutput.mgs" ;;
N := 30;;
gbf grille = <nord, est ; 30 * nord, 30 * est>
and record Bact = { DAP:float, DAPe:float }
and record BactG = Bact + { bactG }
and record BactS = Bact + { bactS} ;;
fun iota_v(v,n) = map((\x.v), iota(n,seq:())) ;;
fun new_grid(v) = iota_v(iota_v(v,N), N) following |nord>, |est> ;;
fun majBactG[DAPexport = 0.2, DAPimport = 0.2, DAPconso= 1, SupDiff = 2.4, InfDiff = 2.02 ](x) =
if ( ( x.DAP > InfDiff ) & ( x.DAP < SupDiff ) & (random(1) < 0.8) ) then
{DAP = x.DAP , DAPe = x.DAPe, bactS} else
let dap = if x.DAP - DAPconso > 0 then x.DAP - DAPconso else 0 fi
and dape= x.DAPe
in if dap > dape then
x + {DAP = dap - DAPexport * dap, DAPe = dape + DAPexport * dap }
else x + {DAP = dap + DAPimport * dape, DAPe = dape - DAPimport * dape }
fi
fi
;;
fun majBactS[DAPexport = 0.2, DAPimport = 0.2, DAPprod=10](x) =
let dap = x.DAP + DAPprod
and dape= x.DAPe
in if dap > dape then
x + {DAP = dap - DAPexport * dap, DAPe = dape + DAPexport * dap }
else x + {DAP = dap + DAPimport * dape, DAPe = dape - DAPimport * dape }
fi
;;
trans evol[Delta_t=0.1,DAPeDiff=1, DAPeDegrad = 0.2] = {
(* production of DAP *)
x:BactS => (
let d = neighborsfold(
(\y.\acc.( DAPeDiff*Delta_t*(y.DAPe-x.DAPe) + acc)),
x.DAPe,
x)
in majBactS( x + {DAPe = if ( d - DAPeDegrad * x.DAPe) > 0 then d - DAPeDegrad * x.DAPe else 0 fi } )
);
(* Diffirentiation and Consumption *)
x:BactG => (
let d = neighborsfold(
(\y.\acc.( DAPeDiff*Delta_t*(y.DAPe-x.DAPe) + acc)),
x.DAPe,
x)
in majBactG(x + {DAPe = if ( d - DAPeDegrad * x.DAPe) > 0 then d - DAPeDegrad * x.DAPe else 0 fi } )
)
} ;;
g := new_grid({DAP=6.0, DAPe=3.0, bactG}) ; 0 ;;
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;;
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;;
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;;
g := set_gbfpos(g, (random(30)*|nord> + random(30)*|est>), {DAP = 6.0, DAPe=3.0, bactS}) ;;
evol[iter=1000,interlude=GBVexport((\v.("DAPe = "+(12 * v.DAPe )+if BactS(v) then ", bactS= 255" else ", bactG = 255"fi )))](g) ;;