Imperial/Wet Lab/Protocols/CE1.4

From 2007.igem.org

(Difference between revisions)
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==Reagents==
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'''Aims'''
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<br> Proper experimental amounts for reaction mixtures of S30 E.coli cell extract from Promega.
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===Equipment===
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*Eppendorf Tubes
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*Gilson p20,p200,p1000
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===Reagents===
*Pyruvate kinase
*Pyruvate kinase
*rNTPs
*rNTPs
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**Minus Cysteine
**Minus Cysteine
**Minus Leucine
**Minus Leucine
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*pTet DNA plasmid
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*DNA from midiprep/maxiprep
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==Steps==
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===Protocol===
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#Fill an eppendorf tube with two samples (56ul x 2) of home made cell extract including reaction buffer, pyruvate kinase and rNTPs.The volumes are shown below:
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#One reaction mixture comprises:
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#*Home made S30 - 16.2ul
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*Home made S30 - 16.2ul
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#*Reaction Buffer- 30ul
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*Reaction Buffer- 30ul
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#*rNTP's - 1ul
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*rNTP's - 1ul
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#*Pyruvate Kinase - 3.1ul
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*Pyruvate Kinase - 3.1ul
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#*DNA - 4ul
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*DNA - 4ul
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#*ddH<sub>2</sub> - 5.7ul
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*ddH<sub>2</sub> - 5.7ul
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#Fill a second eppendorf tube with two samples (40ul x 2) of commercial cell extract including the amino acids mixture, and preincubation buffer.
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#Then add 4ug/2ug worth of DNA, before topping it up to a total volume of 60ul with nuclease free water.
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#Place a quarter of each mixture in a well in the 96 well plate, making up 2 wells (B3 and B5).
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#In another well (C4), as a control, place another quarter of only the commercial cell extract, with 28ul of water.
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#In the last well (D5), add a quarter of each mixture. This serves as the negative control.
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#In the last well, add nuclease free water (again as a negative control).
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# In wells B3, B5 and C4, add 20ul of DNA.
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#Measure the fluorescence at 30 min intervals for the 1st hour, and hourly intervals thereafter.
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#After each measurement, cover the plate with the sticky lid.
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Revision as of 14:56, 25 October 2007

Aims
Proper experimental amounts for reaction mixtures of S30 E.coli cell extract from Promega.

Equipment

  • Eppendorf Tubes
  • Gilson p20,p200,p1000

Reagents

  • Pyruvate kinase
  • rNTPs
  • S30 cell extract (home made)
  • Reaction buffer (home made)
  • Commercial S30 cell extract
  • Commercial Pre-incubation mix
  • Amino Acids
    • Minus Cysteine
    • Minus Leucine
  • DNA from midiprep/maxiprep

Protocol

  1. One reaction mixture comprises:
  • Home made S30 - 16.2ul
  • Reaction Buffer- 30ul
  • rNTP's - 1ul
  • Pyruvate Kinase - 3.1ul
  • DNA - 4ul
  • ddH2 - 5.7ul
  1. Then add 4ug/2ug worth of DNA, before topping it up to a total volume of 60ul with nuclease free water.