Melbourne/Software

From 2007.igem.org

(Difference between revisions)
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**[http://au.expasy.org/tools/pi_tool.html| pI & MW (Expasy)]
**[http://au.expasy.org/tools/pi_tool.html| pI & MW (Expasy)]
**[http://tools.neb.com/NEBcutter2/index.php NEB cutter 2.0]
**[http://tools.neb.com/NEBcutter2/index.php NEB cutter 2.0]
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+
**[http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites]
*Used for Blue light receptor component:
*Used for Blue light receptor component:
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**[http://www.sbc.su.se/~miklos/DAS/maindas.html| DAS transmembrane prediction]
**[http://www.sbc.su.se/~miklos/DAS/maindas.html| DAS transmembrane prediction]
**[http://ezproxy.lib.unimelb.edu.au/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed| pubmed]
**[http://ezproxy.lib.unimelb.edu.au/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed| pubmed]
 +
**[http://www.mybio.net/biowiki/Restriction_analysis| restriction mapping engines]
**[http://au.expasy.org/| EXPASY]
**[http://au.expasy.org/| EXPASY]
** http://www.arabidopsis.org/
** http://www.arabidopsis.org/
** http://www.yeastgenome.org/
** http://www.yeastgenome.org/
**[http://www.uni-giessen.de/~gx1052/IECA/ieca.html| Ecoli database portal]
**[http://www.uni-giessen.de/~gx1052/IECA/ieca.html| Ecoli database portal]

Revision as of 05:40, 12 July 2007

  • Used for GVP component:
    • [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=3089519&uids=&dopt=gbwithparts&dispmax=1&sendto=| NCBI core nucleotide database for Gvp AF053765]
    • [http://www.ncbi.nlm.nih.gov/BLAST/| BLAST]
    • [http://www.ncbi.nlm.nih.gov/gorf/gorf.html| ORF prediction]
    • [http://au.expasy.org/tools/pi_tool.html| pI & MW (Expasy)]
    • [http://tools.neb.com/NEBcutter2/index.php NEB cutter 2.0]
    • [http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites]
  • Used for Blue light receptor component:


  • Other usefull sites:
    • [http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI)]
    • [http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp| Profiling Ecoli chromosome]
    • [http://chemfinder.cambridgesoft.com/| Chemfinder]
    • [http://www.ebi.ac.uk/clustalw/| Clustal W alignment]
    • [http://www.sbc.su.se/~miklos/DAS/maindas.html| DAS transmembrane prediction]
    • [http://ezproxy.lib.unimelb.edu.au/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed| pubmed]
    • [http://www.mybio.net/biowiki/Restriction_analysis| restriction mapping engines]
    • [http://au.expasy.org/| EXPASY]
    • http://www.arabidopsis.org/
    • http://www.yeastgenome.org/
    • [http://www.uni-giessen.de/~gx1052/IECA/ieca.html| Ecoli database portal]
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