Tokyo/Formulation/1.toggle model

From 2007.igem.org

< Tokyo/Formulation
Revision as of 01:44, 24 October 2007 by Akama (Talk | contribs)

1.toggle model

First,the ordinary differential equations(ODEs) of the toggle switch were derived as


Expression1-1.jpg Parameter1-1.jpg


These equations were normalized as follows:


Expression1-2.jpg


In the steady state,time derivatives are zero:


Expression3-5.jpg


As a result,the nullclines of this system were derived as


Siki2.jpg


which indicate the nullclines of the system shown in Fig●.
About parameters,we use three sets of parameters.
  1)the maximum expression rate of repressor A and repressor B is balanced,and hill coefficient of both A and B is three.
  2)the maximum expression rate of repressor A and repressor B is equal,and hill coefficient of A is one.
  3)the maximum expression rate of repressor A and repressor B is not balanced,and hill coefficient of both A and B is three.
Parameter1-2.jpgParameter1-3.JPGParameter1-4.JPG
Toggle1.jpgToggle2.jpgToggle1-4.jpg


First,we carried out kinetic simulations in the condition of Fig●.The results are shown in Fig●.


1. (Ra:low , Rb:high) 2. (Ra:high , Rb:low) 3. (Ra:middle , Rb:middle)


Toggle3.jpg Toggle4.JPG Toggle5.JPGToggle1-1.jpg


Fig● indicate that when the initial condition is (Ra,Rb)=(0.0,2.5),which is near stable equilibrium point B, the values of Ra and Rb goes to stable equilibrium point B and when the initial condition is (Ra,Rb)=(2.5,0.0),which is near stable equilibrium point A, the values of Ra and Rb goes to stable equilibrium point B.


Next,when the number of stable equilibrium point is one, the result of simulation are shown in Fig●


Toggle6.JPG Toggle7.JPG Toggle8.JPGToggle1-2.jpg


Fig● indicate that when the initial condition is (Ra,Rb)=(0.0,2.5) and when the initial condition is (Ra,Rb)=(2.5,0.0), the values of Ra and Rb goes to stable equilibrium point B.


As a result,taking two stable status need the phaseplane of two stable equilibrium points and we have to set proper parameters.