From 2007.igem.org

Introduction | Project Design ( 1.Sticky Hands | 2.Communication | 3.Size Control ) | Making Marimos | Our Goal || Team Members | メンバ連絡簿

Stickey Tags

Our Aim

To make stickey hands on E.coli, we focused on their flagella that are located outside the cells. We used the following mechanisms:

• Display sticky peptides in flagellar filament.
• His-tag. The imidazole group in histidines make a complex with metal ions.　

We combined these two and made a His-tagged flagella in the hope to stick them together via metal ions.

About flagella

E.Coli have 5-10 flagella. The flagella is used for swimming and for chemotaxis; the bacteria run when they find attractant, tumble when there is a repellent.

E.coli flagella consist of three parts: a basal body, a hook, and a filament. The filament of E.Coli is a rigid, helical, and cylindrical structure which is 10-15μm long and 23nm thick in diameter. It is built from ~20000 subunits of a ~55kDa single protein, FliC. FliC has three domains, D1,D2,D3; although D1 and D2 are needed for the formation of the functional flagellar filament, D3 domain which sticks outside of the fillament are not essential[1].

"Variable" FliC D3 domain

It is reported that the proteins up to 49.4kDa could be displayed on the cell surface of E.Coli using flagellin fusion protein.[2]

References

1. Kuwajima, G. et al.: Nature Biotechnology, 6, 1080-1083 (1988).
2. Tanskanen, J. et. al.: Appl. and Env. Microbiol., 4152-4156 (2000)

About Histidine Tag

See [http://en.wikipedia.org/wiki/His-tag wikipedia article].

Experiments

Making FliC-his gene

• We inserted the short peptide with six histidine (“His-Tag”) into the fliC D3 domain.

• Sequence Confirmed
  
• Swarm Confirmed
  
• Flagella strained with anti-flagella antibody

Checking the "Stickiness": Beads Adsorption

Purpose

Confirm that the his-tag are displaied on the flagella and are capable of binding to Co²⁺-surface.

Samples

• JW1908(⊿fliC strain)
  • pUC19-fliC-his
  • no plasmid
• GI826(⊿fliC⊿motB strain)
  • pUC19-fliC-his
  • no plasmid

Procedure

1. pUC19-FliC-His was transformed to JW1908(fliC) and GI826(fliC motB).
2. Incubated 4 cell samples written above.
3. Culture was suspended with beads which will stick to histidine.
4. Adsorbed E.coli on the beads was washed with a buffer and spreaded on agar plates.
5. The colony of each plate was counted.

Results&Discussion

1.Stickiness check

• In the presence　of Co²⁺Histidine tag,beads

Co²⁺Histidine Tagの存在よって大腸菌がビーズに吸着している．

• Ni²⁺よりもCo²⁺のほうがfliC-his存在下でより吸着している．
• Ni²⁺よりもCo²⁺のほうがfliC-hisの有無で吸着の差が大きい
• The number of colony dramatically decreased with out Co2+ or FliC-His plasmid.

• FliC(hisなし)はないんでしたっけ？古
  • ないです。今から取るか否か、というところです。結果が出るのはwikiの締め切りの後（明日の昼）です。Wikiにはどのように考察、記載するべきでしょうか？Tominaga
• 考察も書いたら？　なぜコバルトがニッケルより良いのか？一般的にニッケルよりコバルトの方が結合力が強いことが知られてて，FilC-hisに関してもそれは変わらないみたいな・・・by tashiro

2.Strainの比較（データ？）

Strain	Co2+	No metal
JW1908 fliC(-), motB(+)	吸着していない	吸着していない
GI826 fliC(-), motB(-)	吸着していた	吸着していない

• ここで言うところの、吸着していた・していない、という差はどんなデータから判断していますか？by とよたろ
  • stickness checkの結果から判断しました。
• 冨永くんのデータ記載待ちです．それか今日学校で確認します．古
  • 取れているデータはすべて記載してあります。