Boston University/Zymo Transformation Results

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(Overview of Zymo Transformation Results)
(Overview of Zymo Transformation Results)
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:However, there are some important things to note from these results. First of all, for the Zymo plates in which transformed Shewy was poured (second picture, middle column) the bottom plate has a scant few colonies as compared to the two lawn-covered plates above it. Since the top two plates in the column are pBAD18s and pBAD30, it appears that pjQ200 has a lower transformation efficiency into Shewanella than the other two plasmids.
:However, there are some important things to note from these results. First of all, for the Zymo plates in which transformed Shewy was poured (second picture, middle column) the bottom plate has a scant few colonies as compared to the two lawn-covered plates above it. Since the top two plates in the column are pBAD18s and pBAD30, it appears that pjQ200 has a lower transformation efficiency into Shewanella than the other two plasmids.
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:Secondly, we believe that there is also fungal/yeast contamination for the two plates in which Zymo-transformed E. coli was poured (first picture, top left plate and the plate below it). Close examination reveals that there are two visually distinct types of colonies forming and there are peculiarly '''"sweet"''' and '''"delicious"''' smells coming from the plates, which suggests a yeast contamination. Coincidentally, the last time a set of results had a yeast contamination was when we were doing a Zymo transformation with E. coli. We may need to check our Zymo kit for contamination.
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:Secondly, we believe that there is also fungal/yeast contamination for the two plates in which Zymo-transformed E. coli was poured (first picture, top left plate and the plate below it). Close examination reveals that there are two visually distinct types of colonies forming and there are peculiarly '''"sweet"''' and '''"delicious"''' smells coming from the plates, which suggests a yeast contamination. Coincidentally, the last time a set of results had a yeast contamination was when we were doing an earlier Zymo transformation with E. coli. We may need to check our Zymo kit for contamination.
[[Image:BU_zymo_pour_ecoli.jpg]]
[[Image:BU_zymo_pour_ecoli.jpg]]

Revision as of 19:12, 16 July 2007

Introduction to Zymo Transformation and Testing

During the weekend of 7/14/07, the BU iGEM team ran a test of Zymo transformation of plasmids pBAD18s, pBAD30, and pjQ200 into wildtype S. oneidensis. Plasmids pBAD18s and pBAD30 were recommended to us by Professor Gardner as possible vectors for mutated Shewy genes. pjQ200 was the plasmid our team had previously selected as a prime candidate for serving as a vector. In order to check (and in the case of pjQ200, double-check) that these plasmids are capable of direct transformation into Shewy, tests of Zymo transformation and electroporation were conducted. For both types of transformation, E. coli was used as a control to verify that our transformation procedures were conducted properly. The results are posted below in a series of images and a short analysis.

Results of Zymo Transformation

E. Coli Transformants
The image immediately to the right of this text shows the results from our transformation of E.coli with plasmids pBAD18s, pBAD30, and pjQ200 via Zymo transformation and electroporation.
The contents of the plates are as follows(column indicates transformation type):
Zymo(poured)Zymo(streaked)Electroporation
pBAD18spBAD18spBAD18s
pBAD30pBAD30pBAD30
pjQ200pjQ200pjQ200
The "poured" and "streaked" designations refer to how the transformed E. coli were put onto the plate. When transformed E. coli were streaked onto the plate, 5 microliters were used. When transformed E. coli were poured onto the plate, 100 microliters were used.

BU ecoli zymo electro.jpg

Shewy Transformants
The image immediately to the right of this text shows the results from our transformation of S. oneidensis with plasmids pBAD18s, pBAD30, and pjQ200 via Zymo transformation and electroporation.
The contents of the plates are as follows(column indicates transformation type):
Zymo(streaked)Zymo(poured)Electroporation
pBAD18spBAD18spBAD18s
pBAD30pBAD30pBAD30
pjQ200pjQ200pjQ200
The "poured" and "streaked" designations refer to how the transformed Shewy were put onto the plate. When transformed Shewy were streaked onto the plate, 5 microliters were used. When transformed Shewy were poured onto the plate, 100 microliters were used.
BU shewy zymo electro.jpg

Overview of Zymo Transformation Results

The results from the Zymo transformation went fairly well. Streaking of transformed E. coli (first picture, middle column) and Shewy (second picture, left column) resulted in minimal/no colonies forming, which suggests that the concentration of transformed cells is very low. However, the plates in which 100 microliters of transformed cells were poured had many colonies for E. coli (first picture, left column) and a thick lawn of Shewy (second picture, middle column).
However, there are some important things to note from these results. First of all, for the Zymo plates in which transformed Shewy was poured (second picture, middle column) the bottom plate has a scant few colonies as compared to the two lawn-covered plates above it. Since the top two plates in the column are pBAD18s and pBAD30, it appears that pjQ200 has a lower transformation efficiency into Shewanella than the other two plasmids.
Secondly, we believe that there is also fungal/yeast contamination for the two plates in which Zymo-transformed E. coli was poured (first picture, top left plate and the plate below it). Close examination reveals that there are two visually distinct types of colonies forming and there are peculiarly "sweet" and "delicious" smells coming from the plates, which suggests a yeast contamination. Coincidentally, the last time a set of results had a yeast contamination was when we were doing an earlier Zymo transformation with E. coli. We may need to check our Zymo kit for contamination.

BU zymo pour ecoli.jpg BU zymo pour shewy.jpg BU zymo streak ecoli.jpg BU zymo streak shewy.jpg

BU zymo pour ecoli pjq200.jpg

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