ETHZ/Biology/parts
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- | Although the parts have been synthesized by GENEART and were also shipped in their high-copy plasmids, we desided to change the cloning vectors. This strategy is based on the fact that the learning and reporting subsystem parts are not supposed to exist in high-copy numbers, whereas the constitutive subsystem parts are. Therefore the following plasmids have been used: | + | Although the parts have been synthesized by GENEART and were also shipped in their high-copy plasmids, we desided to change the cloning vectors. This strategy is based on the fact that the learning and reporting subsystem parts are not supposed to exist in high-copy numbers, whereas the constitutive subsystem parts are. Therefore, the following plasmids have been used: |
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Revision as of 15:56, 23 October 2007
System Parts
educatETH E.coli consists of 11 parts that can be synthesized independently (want to know how this is done in the lab? Then visit our In the Lab page!) Please note that four of them (4,5 and 8,9) form together two functional system units. They have been separated to ensure comparable part lengths and thus enable easier introduction into plasmids. All parts are listed in the following:
1 | TetR production | BBa_I739001 | constitutive subsystem | |
---|---|---|---|---|
2 | LacI production | BBa_I739002 | constitutive subsystem | |
3 | LuxR production | BBa_I739003 | constitutive subsystem | |
4 | 1st half of P22 cII / EYFP production | BBa_I739004 | reporting subsystem | |
5 | 2nd half of P22 cII / EYFP production | BBa_I739005 | reporting subsystem | |
6 | cI production | BBa_I739006 | learning subsystem | |
7 | P22 cII production | BBa_I739007 | learning subsystem | |
8 | 1st half of cI / ECFP production | BBa_I739008 | reporting subsystem | |
9 | 2nd half of cI / ECFP production | BBa_I739009 | reporting subsystem | |
10 | RFP production | BBa_I739010 | reporting subsystem | |
11 | GFP production | BBa_I739011 | reporting subsystem |
1+2+3 | tetR + lacI + luxR production | BBa_I739013 | constitutive subsystem | |
---|---|---|---|---|
4+5 | P22 cII + EYFP production | BBa_I739015 | reporting subsystem | |
8+9 | cI + ECFP production | BBa_I739016 | reporting subsystem | |
(4+5)+(8+9) | (P22 cII + EYFP) + (cI + ECFP) production | BBa_I739017 | reporting subsystem | |
6+7 | cI + P22 cII production | BBa_I739018 | learning subsystem | |
10+11 | RFP + GFP production | BBa_I739019 | reporting subsystem | |
(6+7)+(10+11) | (cI + P22 cII) + (RFP + GFP) production | BBa_I739020 | learning/reporting subsystem |
Many of the above mentioned parts contain double promoters. This promoter constructs contain two independent classes of operator sites and can therefore be regulated by two different types of molecules. Double promoters form the basis of the inducible toggle switch and hence the memory of our learning system. This concept could also help future projects in developing devices and systems that need extended regulation. In the following, we introduce a selection of first generation double promoters to the Registry of Standard Biological Parts:
1' | cI negative / tetR negative promoter | BBa_I739102 | reporting subsystem | |
---|---|---|---|---|
2' | lacI negative / P22 cII negative promoter | BBa_I739103 | reporting subsystem | |
3' | luxR/HSL positive / P22 cII negative promoter | BBa_I739104 | learning subsystem | |
4' | luxR/HSL positive / cI negative promoter | BBa_I739105 | learning subsystem | |
5' | tetR negative / P22 cII negative promoter | BBa_I739106 | reporting subsystem | |
6' | cI negative / lacI negative promoter | BBa_I739107 | reporting subsystem |
In order to test if the concept of the proposed double promoters is working, simple proof of concept (PoC) parts have been constructed. The PoC promoter, which shows strong similarites to BBa_I739102, consists of two TetR operator sequences linked to a constitutive promoter. In contrast to the other double promoters , the PoC promoter is only single regulated. The PoC intermediate is part of the PoC composite the concept can be tested with, that is, EYFP production. The p22cII coding region is included to ensure the functionality in multicistronic constructs.
1" | PoC promoter | BBa_I739101 | proof of concept, no part of the system | |
---|---|---|---|---|
2" | PoC intermediate | BBa_I739014 | proof of concept, no part of the system | |
3" | PoC composite | BBa_I739021 | proof of concept, no part of the system |
Although the parts have been synthesized by GENEART and were also shipped in their high-copy plasmids, we desided to change the cloning vectors. This strategy is based on the fact that the learning and reporting subsystem parts are not supposed to exist in high-copy numbers, whereas the constitutive subsystem parts are. Therefore, the following plasmids have been used:
1"' | pBR322BB1 | BBa_I739201 | high-copy cloning vector, ApR | |
---|---|---|---|---|
2"' | pCK01BB1 | BBa_I739202 | low-copy cloning vector, CmR | |
3"' | pACYC177BB1 | BBa_I739203 | low-copy cloning vector, KmR |