ETHZ/FSM

From 2007.igem.org

(Difference between revisions)
(Finite State Machine View on the System)
Line 1: Line 1:
-
<center>[[Image:Eth_zh_logo_4.png|830px]]</center>
+
[[Image:Eth_zh_logo_4.png|830px]]
-
 
+
<!--
<center>[[ETHZ | Main Page]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Model | System Modeling]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Simulation | Simulations]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Biology | System Implementation]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Biology/Lab| Lab Notes]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Meet_the_team | Meet the Team]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Internal | Team Notes]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Pictures | Pictures!]]</center><br>
<center>[[ETHZ | Main Page]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Model | System Modeling]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Simulation | Simulations]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Biology | System Implementation]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Biology/Lab| Lab Notes]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Meet_the_team | Meet the Team]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Internal | Team Notes]] &nbsp;&nbsp;&nbsp;&nbsp; [[ETHZ/Pictures | Pictures!]]</center><br>
 +
-->
 +
__NOTOC__
 +
<html>
 +
<script type="text/javascript" src="http://christos.bergeles.net/eth_dropdowntabs.js">
 +
 +
/***********************************************
 +
* Drop Down Tabs Menu- (c) Dynamic Drive DHTML code library (www.dynamicdrive.com)
 +
* This notice MUST stay intact for legal use
 +
* Visit Dynamic Drive at http://www.dynamicdrive.com/ for full source code
 +
***********************************************/
 +
 +
</script>
 +
 +
<!-- CSS for Drop Down Tabs Menu #1 -->
 +
<link rel="stylesheet" type="text/css" href="http://christos.bergeles.net/eth_ddcolortabs.css" />
 +
<div id="colortab" class="ddcolortabs">
 +
<ul>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ" title="Home" rel="dropmenu_home"><span>Home</span></a></li>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model" title="Modeling" rel="dropmenu_modeling"><span>System Modeling</span></a></li>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Simulation" title="Simulations" rel="dropmenu_simulation"><span>Simulations</span></a></li>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology" title="System Implementation" rel="dropmenu_biology"><span>System Implementation</span></a></li>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Meet_the_team" title="Meet the team" rel="dropmenu_meettheteam"><span>Meet the team</span></a></li>
 +
<li><a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Pictures" title="Pictures!" rel="dropmenu_pictures"><span>Pictures!</span></a></li>
 +
</ul>
 +
</div>
 +
<div class="ddcolortabsline">&nbsp;</div>
 +
 +
 +
<!--1st drop down menu -->
 +
<div id="dropmenu_home" class="dropmenudiv_a">
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ#Introduction">Introduction Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ#Team_Members">Team Members Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ#Acknowledgments">Acknowledgments Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ#Site_Map">Site map Section</a>
 +
</div>
 +
 +
 +
<!--2nd drop down menu -->
 +
<div id="dropmenu_modeling" class="dropmenudiv_a" style="width: 150px;">
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model#Introduction">Introduction Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model#Model_Overview">Model Overview Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model#Detailed_Model">Detailed Model Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model#Final_Model">Final Model Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Modeling_Basics">Modeling Basics Page</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Model#Mathematical_Model">Mathematical Model Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/FSM">FSM View Page</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/FlipFlop">Flip-Flop View Page</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Parameters">Parameters Page</a>
 +
</div>
 +
 +
<!--3rd drop down menu -->
 +
<div id="dropmenu_simulation" class="dropmenudiv_a" style="width: 150px;">
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Simulation#Introduction">Introduction Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Simulation#Simulation_of_Test_Cases">Test Cases Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Simulation#Sensitivity_Analysis">Sensitivity Analysis Section</a>
 +
</div>
 +
 +
<!--4th drop down menu -->
 +
<div id="dropmenu_biology" class="dropmenudiv_a" style="width: 150px;">
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology#Introduction">Introduction Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology#The_Complete_System">The Complete System Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology#System_Phases">System Phases Section</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology/parts">System Parts Page</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Biology/Lab">Lab Notes Page</a>
 +
</div>
 +
 +
<!--5th drop down menu -->
 +
<div id="dropmenu_meettheteam" class="dropmenudiv_a" style="width: 150px;">
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Meet_the_team#The_ETH_Zurich_07_Team">The ETH Zurich 07 Team</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Meet_the_team#Team_Description">Team Description</a>
 +
<a href="https://2007.igem.org/wiki/index.php?title=ETHZ/Internal">Brainstorming Page</a>
 +
</div>
 +
 +
<script type="text/javascript">
 +
//SYNTAX: tabdropdown.init("menu_id", [integer OR "auto"])
 +
tabdropdown.init("colortab", 3)
 +
</script>
 +
 +
</html>
 +
 +
__NOTOC__
=Finite State Machine View on the System =
=Finite State Machine View on the System =

Revision as of 22:25, 24 October 2007

Eth zh logo 4.png

 


Finite State Machine View on the System

Fig. 1: Graph representing the finite state machine.

The proposed system is best described by a Mealy machine, a special type of finite state machines (FSM). Mealy machines are defined by a 6-tuple, (Q, q0, Σ, Λ, δ, Ω), with:

  • Q - a set of states, for the proposed system we use three different states (q0 - not yet trained, q1 - trained to recognize chemical A, q2 - trained to recognize chemical B)
  • q0 - a start state, here we assume we start in a state where the system is not yet trained
  • Σ = {A+L, A, B+L, B} - an input alphabet
  • Λ = {green, red, blue, yellow} - an output alphabet
  • δ : Q × Σ → Q - a state transition function
  • Ω : Q × Σ → Λ - an output function

In detail, the transition function δ and the output function Ω look as follows:

inputs/states q0 q1 q2 inputs/states q0 q1 q2
A+L q1 q1 q1 A+L cyan cyan green
A q0 q0 q0 A cyan cyan cyan
B+L q2 q2 q2 B+L yellow red yellow
B q0 q0 q0 B yellow yellow yellow

The resulting automaton is shown in Fig. 1.
In its native state (q0), the system reacts on the presence of either chemical A or B by fluorescing cyan or yellow, respectively. The system itself remains in state q0. Only when the input chemical is combined with a learning signal (chemical L), it changes its state either to q1 (in presence of chemical A) or q2 (in presence of chemical B). In these two states, the system is able to distinguish between changing input: while the system is in state q1, the system starts fluorescing red if confronted with chemical B and vice versa when the system is in state q2 and confronted with chemical A (it fluoresces green). In order to maintain the states q1 and q2, the learning signal L has to be present all the time.