Melbourne/Software
From 2007.igem.org
< Melbourne(Difference between revisions)
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| + | [[Melbourne|<return to home page>]] | ||
*Used for GVP component: | *Used for GVP component: | ||
**[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=3089519&uids=&dopt=gbwithparts&dispmax=1&sendto=| NCBI core nucleotide database for Gvp AF053765] | **[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=3089519&uids=&dopt=gbwithparts&dispmax=1&sendto=| NCBI core nucleotide database for Gvp AF053765] | ||
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**[http://arbl.cvmbs.colostate.edu/molkit/mapper/index.html , Colostate Graphical map] | **[http://arbl.cvmbs.colostate.edu/molkit/mapper/index.html , Colostate Graphical map] | ||
**[http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites] | **[http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites] | ||
| - | **[http://insilico.ehu.es/restriction/ | + | **[http://insilico.ehu.es/restriction/many_seqs/ Restriction fragments of Linear sequences only] |
| + | **[http://www.restrictionmapper.org/ Restriction fragments of circular sequences unfortunately verbose] | ||
| + | **[http://www.clcbio.com/index.php?id=1102 (CLC)] | ||
| + | **[http://www.idtdna.com/analyzer/Applications/OligoAnalyzer/ oligo analyzer] | ||
| + | **[http://www.kazusa.or.jp/codon/ Codon usage database] | ||
| + | **[http://bioinformatics.org/sms/rev_comp.html Reverse Complement DNA] | ||
| + | [http://au.expasy.org/tools/dna.html Translation tool] | ||
*Used for Blue light receptor component: | *Used for Blue light receptor component: | ||
*Other usefull sites: | *Other usefull sites: | ||
| + | **[http://molbiol-tools.ca/Translation.htm List of gene finding tools] | ||
**[http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI)] | **[http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI)] | ||
**[http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp| Profiling Ecoli chromosome] | **[http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp| Profiling Ecoli chromosome] | ||
Latest revision as of 03:26, 16 July 2007
- Used for GVP component:
- NCBI core nucleotide database for Gvp AF053765
- BLAST
- ORF prediction
- pI & MW (Expasy)
- NEB cutter 2.0
- , Colostate Graphical map
- locate possible silent mutations introducing restriction sites
- Restriction fragments of Linear sequences only
- Restriction fragments of circular sequences unfortunately verbose
- (CLC)
- oligo analyzer
- Codon usage database
- Reverse Complement DNA
- Used for Blue light receptor component:
- Other usefull sites:
