Melbourne/Software
From 2007.igem.org
< Melbourne(Difference between revisions)
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| - | + | [[Melbourne|<return to home page>]] | |
| - | * | + | *Used for GVP component: |
| - | * | + | **[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=3089519&uids=&dopt=gbwithparts&dispmax=1&sendto=| NCBI core nucleotide database for Gvp AF053765] |
| + | **[http://www.ncbi.nlm.nih.gov/BLAST/| BLAST] | ||
| + | **[http://www.ncbi.nlm.nih.gov/gorf/gorf.html| ORF prediction] | ||
| + | **[http://au.expasy.org/tools/pi_tool.html| pI & MW (Expasy)] | ||
| + | **[http://tools.neb.com/NEBcutter2/index.php NEB cutter 2.0] | ||
| + | **[http://arbl.cvmbs.colostate.edu/molkit/mapper/index.html , Colostate Graphical map] | ||
| + | **[http://bioweb.pasteur.fr/seqanal/interfaces/silent.html locate possible silent mutations introducing restriction sites] | ||
| + | **[http://insilico.ehu.es/restriction/many_seqs/ Restriction fragments of Linear sequences only] | ||
| + | **[http://www.restrictionmapper.org/ Restriction fragments of circular sequences unfortunately verbose] | ||
| + | **[http://www.clcbio.com/index.php?id=1102 (CLC)] | ||
| + | **[http://www.idtdna.com/analyzer/Applications/OligoAnalyzer/ oligo analyzer] | ||
| + | **[http://www.kazusa.or.jp/codon/ Codon usage database] | ||
| + | **[http://bioinformatics.org/sms/rev_comp.html Reverse Complement DNA] | ||
| + | [http://au.expasy.org/tools/dna.html Translation tool] | ||
| + | *Used for Blue light receptor component: | ||
*Other usefull sites: | *Other usefull sites: | ||
| - | *[[http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI) | + | **[http://molbiol-tools.ca/Translation.htm List of gene finding tools] |
| - | * | + | **[http://www.ncbi.nlm.nih.gov/BLAST/producttable.shtml| BLAST alternatives (NCBI)] |
| - | * | + | **[http://www.shigen.nig.ac.jp/ecoli/pec/index.jsp| Profiling Ecoli chromosome] |
| - | * | + | **[http://chemfinder.cambridgesoft.com/| Chemfinder] |
| - | * | + | **[http://www.ebi.ac.uk/clustalw/| Clustal W alignment] |
| - | * | + | **[http://www.sbc.su.se/~miklos/DAS/maindas.html| DAS transmembrane prediction] |
| - | * | + | **[http://ezproxy.lib.unimelb.edu.au/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed| pubmed] |
| - | * | + | **[http://www.mybio.net/biowiki/Main_Page| mybio tools] |
| - | * | + | **[http://au.expasy.org/| EXPASY] |
| - | * | + | ** http://www.arabidopsis.org/ |
| - | * | + | ** http://www.yeastgenome.org/ |
| + | **[http://www.uni-giessen.de/~gx1052/IECA/ieca.html| Ecoli database portal] | ||
Latest revision as of 03:26, 16 July 2007
- Used for GVP component:
- NCBI core nucleotide database for Gvp AF053765
- BLAST
- ORF prediction
- pI & MW (Expasy)
- NEB cutter 2.0
- , Colostate Graphical map
- locate possible silent mutations introducing restriction sites
- Restriction fragments of Linear sequences only
- Restriction fragments of circular sequences unfortunately verbose
- (CLC)
- oligo analyzer
- Codon usage database
- Reverse Complement DNA
- Used for Blue light receptor component:
- Other usefull sites:
