Paris/DISCUSSION

From 2007.igem.org

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*Test of DapA deletion transduction, Thursday, July 5
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*'''Test of DapA deletion transduction, Thursday, July 5
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How did you test for the success of this transduction? Simply with a normal culture without supplemented lysine in the medium, and seeing that the bacteria grows neverthless? Or is it that in the original DapA- strain tha DapA gene was replaced by an antibiotic resistance gene, that should then be present in the transfected bacteria?  
How did you test for the success of this transduction? Simply with a normal culture without supplemented lysine in the medium, and seeing that the bacteria grows neverthless? Or is it that in the original DapA- strain tha DapA gene was replaced by an antibiotic resistance gene, that should then be present in the transfected bacteria?  
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*For the modellers
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*'''For the modellers'''
Have a look at the Cambridge team wiki. They have a detailed page on [http://www.ccbi.cam.ac.uk/iGEM2007/index.php/Software_Modelling_for_Synthetic_Biology  modelling and iGEM. ]  
Have a look at the Cambridge team wiki. They have a detailed page on [http://www.ccbi.cam.ac.uk/iGEM2007/index.php/Software_Modelling_for_Synthetic_Biology  modelling and iGEM. ]  
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*For everybody
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*'''For everybody'''
Have a look at the [https://2007.igem.org/Edinburgh Edinburgh team]  wiki.  They also present a Cre/Lox box in one of their constructions !
Have a look at the [https://2007.igem.org/Edinburgh Edinburgh team]  wiki.  They also present a Cre/Lox box in one of their constructions !
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*Team Notebook and Protocols
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*'''Team Notebook and Protocols'''
I suggest that the Team Notebook section  summarizes the work progress, the meaning of the different steps, and intermediate results. All protocols should be in the protocols section with links.
I suggest that the Team Notebook section  summarizes the work progress, the meaning of the different steps, and intermediate results. All protocols should be in the protocols section with links.
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''Answer'': click here to read [[Paris/Notebook#Monday, July 2|July 2nd]] entry.
''Answer'': click here to read [[Paris/Notebook#Monday, July 2|July 2nd]] entry.
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* I changed two things in the wiki :
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*''' Concerning the wiki'''
The notebook is now accessible via [[Paris/Notebook_Calendar|a calendar]]. I hope that you will prefer the notebook like that. I moved some pages from their places to Paris/, and it is a good idea to take care that every page we create begins by Paris/...
The notebook is now accessible via [[Paris/Notebook_Calendar|a calendar]]. I hope that you will prefer the notebook like that. I moved some pages from their places to Paris/, and it is a good idea to take care that every page we create begins by Paris/...
[[User:Nicolas C.|Nicolas C.]]
[[User:Nicolas C.|Nicolas C.]]
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''[[User:Bottani| Samuel B.]]: The calender is a nice feature, however isn't it possible to have also everything in a single page. It is useful to have an overall view of the notebook. There is a risk with wikis to split informations on too many pages. This is clearly the case by presenting all in a calender...''
''[[User:Bottani| Samuel B.]]: The calender is a nice feature, however isn't it possible to have also everything in a single page. It is useful to have an overall view of the notebook. There is a risk with wikis to split informations on too many pages. This is clearly the case by presenting all in a calender...''
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*Have a look at the [https://2007.igem.org/Boston_University Boston team] wiki main page
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I discussed with Eimad and David (P) and the idea is to make two notebooks :
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* one accessible via the calendar, where we put all that we do during the day (still separated from protocols), for the people in the lab
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* another one which will summarize goals and progresses step by step. We will begin this one soon. [[User:Nicolas C.|Nicolas C.]]
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*'''Have a look at the [https://2007.igem.org/Boston_University Boston team] wiki main page'''
I find it very clear. Maybe a good inspiration for a next version of ours... [[User:Bottani| Samuel B.]]
I find it very clear. Maybe a good inspiration for a next version of ours... [[User:Bottani| Samuel B.]]
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*''' Concerning kinetic measurements '''
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I made a template in order to present growth experiments clearly when we use the 96 plate array.
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Click here to see an [[Paris/July_3|example]].

Revision as of 20:54, 10 July 2007

Discussion Page

This page is for questions, answers and discussions on the project, a kind of open forum.


  • Test of DapA deletion transduction, Thursday, July 5

How did you test for the success of this transduction? Simply with a normal culture without supplemented lysine in the medium, and seeing that the bacteria grows neverthless? Or is it that in the original DapA- strain tha DapA gene was replaced by an antibiotic resistance gene, that should then be present in the transfected bacteria?

  • For the modellers

Have a look at the Cambridge team wiki. They have a detailed page on modelling and iGEM.

  • For everybody

Have a look at the Edinburgh team wiki. They also present a Cre/Lox box in one of their constructions !

  • Team Notebook and Protocols

I suggest that the Team Notebook section summarizes the work progress, the meaning of the different steps, and intermediate results. All protocols should be in the protocols section with links.

Question: how to link directly to a subsection of a page in a wiki?

Answer: click here to read July 2nd entry.

  • Concerning the wiki

The notebook is now accessible via a calendar. I hope that you will prefer the notebook like that. I moved some pages from their places to Paris/, and it is a good idea to take care that every page we create begins by Paris/... Nicolas C.

Samuel B.: The calender is a nice feature, however isn't it possible to have also everything in a single page. It is useful to have an overall view of the notebook. There is a risk with wikis to split informations on too many pages. This is clearly the case by presenting all in a calender...

I discussed with Eimad and David (P) and the idea is to make two notebooks :

  • one accessible via the calendar, where we put all that we do during the day (still separated from protocols), for the people in the lab
  • another one which will summarize goals and progresses step by step. We will begin this one soon. Nicolas C.

I find it very clear. Maybe a good inspiration for a next version of ours... Samuel B.

  • Concerning kinetic measurements

I made a template in order to present growth experiments clearly when we use the 96 plate array. Click here to see an example.