From 2007.igem.org

Textbooks

General

• Snyder, L., and Champness, W. Molecular Genetics of Bacteria. 2Rev Ed edition. American Society for Microbiology. 2002.

Lambda cI and cI regulated promoter

• Ptashne, M. (translator Horikoshi., M.) Genetic Switch: Phage Lambda Revisited (Japanese translation). OHM. 2006.

Journals

Quorum sensing

• Kaplan, H. B. and Greenberg, E. P. 1985. Diffusion of Autoinducer Is Involved in Regulation of the Vibrio fischeri Luminescence System. J. Bacteriol. Vol. 163, No. 3. 1210-1214.

> The concentration of AHL inside and outside of a cell would be the same.

• Stevens, A. M., Dolan M. K., and Greenberg E. P. 1994. Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region.

> Promoter for luxR and negative feedback regulation

Plasmid copy number

• Atlung T., Christensen, B. B., and Hansen, F. G. 1999. Role of the Rom Protein in Copy Number Control of Plasmid pBR322 at different growth rate. Plasmid 41, 110–119.

>The ratio of pBR322 and pACYC184 kept in the same cell.

Simulation

• Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, and Collins JJ.: 'Programmable cells: interfacing natural and engineered gene networks.' Proc Natl Acad Sci U S A., 2004 Jun 1, 101(22):8414-9.

• Tian T, and Burrage K.: 'Stochastic models for regulatory networks of the genetic toggle switch.' Proc Natl Acad Sci U S A. 2006 May 30;103(22):8372-7.

• Garcia-Ojalvo J, Elowitz MB, and Strogatz SH. 'Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.': Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10955-60.

• Gardner TS, Cantor CR, and Collins JJ.: 'Construction of a genetic toggle switch in Escherichia coli.':Nature. 2000 Jan 20;403(6767):339-42.

• Tomioka R, Kimura H, J Kobayashi T, and Aihara K.: 'Multivariate analysis of noise in genetic regulatory networks.': J Theor Biol. 2004 Aug 21;229(4):501-21.

• Vecchio DD., and Sontag ED.: 'Dynamics and Control of Synthetic Bio-molecular Networks': Proceedings of the 2007 American Control Conference. 2007 Jul 11 :1577-1588.