Davidson Missouri W

From 2007.igem.org

(Difference between revisions)
('''Literature and Registry Research''')
('''Literature and Registry Research''')
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== '''Literature and Registry Research'''==
== '''Literature and Registry Research'''==
-
Registry Search for Possible Promoters:
+
'''Registry Search for Possible Promoters:'''
      
      
-
    BBa_J24669 --- arabinose induced
+
BBa_J24669 --- arabinose induced
-
    BBa_R0082 --- Is upstream of the ompC porin gene
+
BBa_R0082 --- Is upstream of the ompC porin gene
-
    BBa_R0074 --- Penl regulated
+
BBa_R0074 --- Penl regulated
-
    BBa_I14017 --- P(Rhl)
+
BBa_I14017 --- P(Rhl)
-
    BBa_I14018 --- P (Bla) --> amp resistance
+
BBa_I14018 --- P (Bla) --> amp resistance
-
    BBa_J3902 --- Pr Fe (Pl + Pll rus operon)
+
BBa_J3902 --- Pr Fe (Pl + Pll rus operon)
-
    BBa_R0077 --- CinR --> thought to have own terminator
+
BBa_R0077 --- CinR --> thought to have own terminator
-
    BBa_R0078 --- CinR (no RBS)
+
BBa_R0078 --- CinR (no RBS)
-
    BBa_R0062 --- luxR & HSL regulated -- luxpR
+
BBa_R0062 --- luxR & HSL regulated -- luxpR
Possibly the use of Constitutive Promoter Family Members to strengthen other promoters.
Possibly the use of Constitutive Promoter Family Members to strengthen other promoters.
 +
 +
'''Literature Search for Polycistronic Genes on Plasmids'''
 +
 +
Sol Operon
 +
http://www.jstage.jst.go.jp/article/bbb/71/1/58/_pdf
 +
 +
Transfer (tra) Operon
 +
http://www.pubmedcentral.nig.gov/picrender.fcgi?artid=1347297&blobtype=pdf
 +
 +
Oligopeptide Permease (opp)
 +
http://www.pubmedcentral.nig.gov/picrender.fcgi?artid=1087318&blobtype=pdf

Revision as of 18:34, 31 May 2007

===Davidson & Missouri Western Team Logos, iGEM2006===

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Contents

Team Meeting Notes

Western Meeting Notes 051407 to Present [1]

Students

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• Will DeLoache, junior biology major, [2]

• Oyinade Adefuye, Senior Biology Major, [3]

• Jim Dickson , junior Math and Economics major, [4]

• Amber Shoecraft, ??? major, [5]

• Andrew Martens, Senior Biology major, [6]

• Michael Waters, Sophmore Biology major, [7]


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• Jordan Baumgardner, junior biology, biochem/molecular bio major, [8]

• Ryan Chilcoat, junior biology major (health sciences), [9]

• Tom Crowley, senior biochem/molecular biology major, [10]

• Lane H. Heard, Central High School graduate, [11]

• Nickolaus Morton, junior chemistry major, [12]

• Michelle Ritter, junior mathematics major, [13]

• Miranda Showalter, junior biology major (health sciences), [14]

• Jessica Treece, junior biology major (health sciences), [15]

• Matthew Unzicker, senior biochem/molecular biology major, [16]

• Amanda Valencia, senior biochem/molecular biology major, [17]

Faculty

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• Malcolm Campbell [http://www.bio.davidson.edu/people/macampbell/macampbell.html], Professor, Department of Biology, [18]

• Karmella Haynes [http://www.bio.davidson.edu/people/kahaynes/kahaynes.html], Visiting Assistant Professor, Department of Biology, [19]

• Laurie Heyer [http://www.davidson.edu/math/heyer/], Associate Professor, Department of Mathematics, [20]

Shipping Address: Malcolm Campbell, Biology Dept. Davidson College, 209 Ridge Road, Davidson, NC 28036 [(704) 894-2692]


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• Todd Eckdahl [http://staff.missouriwestern.edu/~eckdahl/], Professor, Department of Biology, [21]

• Jeff Poet [http://staff.missouriwestern.edu/~poet/], Assistant Professor, Department of Computer Science, Mathematics, and Physics, [22]

Shipping Address: Todd Eckdahl, Biology Department, Missouri Western State University, 4525 Downs Drive, Saint Joseph, MO, 64507 [(816) 271-5873]

Project Overview

Solving the Pancake Problem with an E. coli Computer Our goal is to genetically engineer a biological system that can compute solutions to a puzzle called the burnt pancake problem. The EHOP computer is a proof of concept for computing in vivo, with implications for future data storage devices and transgenic systems.

Resources / Citations

Davidson's Wet Lab Protocols

Cool site for Breakfast [http://www.cut-the-knot.org/SimpleGames/Flipper.shtml]

Karen Acker's paper describing GFP and TetA(c) with Hix insertions [http://www.bio.davidson.edu/Courses/Immunology/Students/spring2006/Acker/Acker_finalpaperGFP.doc]

Bruce Henschen's paper describing one-time flippable Hix sites [http://www.bio.davidson.edu/Courses/genomics/2006/henschen/Bruce_Finalpaper.doc]

Intro to Hamiltonian Path Problem and DNA [http://www.ams.org/featurecolumn/archive/dna-abc2.html]

Literature and Registry Research

Registry Search for Possible Promoters:

BBa_J24669 --- arabinose induced BBa_R0082 --- Is upstream of the ompC porin gene BBa_R0074 --- Penl regulated BBa_I14017 --- P(Rhl) BBa_I14018 --- P (Bla) --> amp resistance BBa_J3902 --- Pr Fe (Pl + Pll rus operon) BBa_R0077 --- CinR --> thought to have own terminator BBa_R0078 --- CinR (no RBS) BBa_R0062 --- luxR & HSL regulated -- luxpR

Possibly the use of Constitutive Promoter Family Members to strengthen other promoters.

Literature Search for Polycistronic Genes on Plasmids

Sol Operon http://www.jstage.jst.go.jp/article/bbb/71/1/58/_pdf

Transfer (tra) Operon http://www.pubmedcentral.nig.gov/picrender.fcgi?artid=1347297&blobtype=pdf

Oligopeptide Permease (opp) http://www.pubmedcentral.nig.gov/picrender.fcgi?artid=1087318&blobtype=pdf