NYMU Taipei/Paper

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<p><font color="#000000" size="2">A very expensive book on Synthetic Biology (US$2700 for single user license edition):</font></p>
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[https://2007.igem.org/NYMU_Taipei/Welcome Back]
+
<p><font color="#000000" size="3">[http://www.bioportfolio.com/cgi-bin/acatalog/Synthetic_Biology__A_New_Paradigm_for_Biological_D.html Synthetic Biology: A New Paradigm for Biological Discovery]</font></p>
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<hr />
 +
<p><font color="#0000ff" size="3">Selected References (sorted by publication date in descending order)</font></p>
 +
<p><font size="2">Synthetic biology through the prism of scenarios.<br />
 +
Biotechnol J. 2007 Aug 17; [Epub ahead of print]</font></p>
 +
<p><font size="2">Robustness Analysis and Tuning of Synthetic Gene Networks.<br />
 +
Bioinformatics. 2007 Jul 30; [Epub ahead of print]</font></p>
 +
<p><font size="2">Combinatorial promoter design for engineering noisy gene expression.<br />
 +
Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12726-31.</font></p>
 +
<p><font size="2">Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.<br />
 +
Methods Enzymol. 2007;422:488-512.</font></p>
 +
<p><font size="2">Nano-enabled synthetic biology.<br />
 +
Mol Syst Biol. 2007;3:125. Epub 2007 Jul 10.</font></p>
 +
<p><font size="2">Synthetic biology: designs for life.<br />
 +
Nature. 2007 Jul 5;448(7149):32-33.</font></p> 
 +
<p><font size="2">Bioengineering novel in vitro metabolic pathways using synthetic biology.<br />
 +
Curr Opin Microbiol. 2007 Jun;10(3):246-53.</font></p>
 +
<p><font size="2">The economics of synthetic biology.<br />
 +
Molecular Systems Biology. 3:117-120, 2007.</font></p>
 +
<p><font size="2">Rebuilding microbial genomes.<br />
 +
Bioessays. 29(6):580-590, 2007.</font></p>
 +
<p><font size="2">A synthetic biology challenge: making cells compute.<br />
 +
Molecular BioSystems. 3:343-353, 2007.</font></p>
 +
<p><font size="2">Guiding bacteria with small molecules and RNA.<br />
 +
Journal of the American Chemical Society. 129(21):6807-6811, 2007.</font></p>
 +
<p><font size="2">Designing biological systems.<br />
 +
Genes & Development. 21:242-254, 2007.</font></p>
 +
<p><font size="2">Chemical aspects of synthetic biology.<br />
 +
Chemistry & Biodiversity. 4(4):603-621, 2007.</font></p>
 +
<p><font size="2">A bottom-up approach to gene regulation.<br />
 +
Nature 30: 979, 2006</font></p>
 +
<p><font size="2">Regulation of flagella.<br />
 +
Curr Opin Microbiol 6: 869, 2006</font></p>
 +
<p><font size="2">Regulatory dynamics of synthetic gene networks with positive feedback.<br />
 +
J Mol Biol 5: 239, 2006</font></p>
 +
<p><font size="2">Synthetic biology: new engineering rules for an emerging discipline.<br />
 +
Mol Syst Biol, 2006</font></p>
 +
<p><font size="2">A synthetic multicellular system for programmed pattern formation.<br />
 +
Nature 30: 979, 2005</font></p>
 +
<p><font size="2">A synthetic gene-metabolic oscillator.<br />
 +
Nature 30: 979, 2005</font></p>
 +
<p><font size="2">Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.<br />
 +
Science 29: 162, 2005</font></p>
 +
<p><font size="2">Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.<br />
 +
Nat Biotechnol 17: 721, 2005</font></p>
 +
<p><font size="2">Hysteresis in a synthetic mammalian gene network.<br />
 +
Proc Natl Acad Sci U S A 10: 272, 2005</font></p>
 +
<p><font size="2">Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.<br />
 +
Proc Natl Acad Sci U S A 10: 272, 2005</font></p>
 +
<p><font size="2">Semi-synthetic mammalian gene regulatory networks.<br />
 +
Metab Eng 3: 397, 2005</font></p>
 +
<p><font size="2">Transcriptional regulation and metabolism.<br />
 +
Biochem Soc Trans 2: 579, 2005</font></p>
 +
<p><font size="2">Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system.<br />
 +
Biotechnol Bioeng 2: 173, 2005</font></p>
 +
<p><font size="2">A network of orthogonal ribosome x mRNA pairs.<br />
 +
Nat Chem Biol, 2005</font></p>
 +
<p><font size="2">Programmed population control by cell-cell communication and regulated killing.<br />
 +
Nature 30: 979, 2004</font></p>
 +
<p><font size="2">Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.<br />
 +
Cell 26: 626, 2004</font></p>
 +
<p><font size="2">An engineered epigenetic transgene switch in mammalian cells.<br />
 +
Nat Biotechnol 17: 721, 2004</font></p>
 +
<p><font size="2">Programmable cells: interfacing natural and engineered gene networks.<br />
 +
Proc Natl Acad Sci U S A 10: 272, 2004</font></p>
 +
<p><font size="2">Design of artificial cell-cell communication using gene and metabolic networks.<br />
 +
Proc Natl Acad Sci U S A 101:2299-304, 2004</font></p>
 +
<p><font size="2">Spatiotemporal control of gene expression with pulse-generating networks.<br />
 +
Proc Natl Acad Sci U S A 10: 272, 2004</font></p>
 +
<p><font size="2">Optimizing genetic circuits by global sensitivity analysis.<br />
 +
Biophys J 4: 463, 2004</font></p>
 +
<p><font size="2">Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in ''Escherichia coli''.<br />
 +
Cell 26: 626, 2003</font></p>
 +
<p><font size="2">Combinatorial synthesis of genetic networks.<br />
 +
Science 29: 162, 2002</font></p>
 +
<p><font size="2">Directed evolution of a genetic circuit.<br />
 +
Proc Natl Acad Sci U S A 10: 272, 2002</font></p>
 +
<p><font size="2">Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.<br />
 +
EMBO J 10: 456, 2001</font></p>
 +
<p><font size="2">A synthetic oscillatory network of transcriptional regulators.<br />
 +
Nature 30: 979, 2000</font></p>
 +
<p><font size="2">Engineering stability in gene networks by autoregulation.<br />
 +
Nature 30: 979, 2000</font></p>
 +
<p><font size="2">Construction of a genetic toggle switch in Escherichia coli.<br />
 +
Nature 30: 979, 2000</font></p>
 +
<p>&nbsp;</p>
 +
<hr />
 +
[https://2007.igem.org/Taipei Back]

Latest revision as of 11:20, 27 October 2007

A very expensive book on Synthetic Biology (US$2700 for single user license edition):

[http://www.bioportfolio.com/cgi-bin/acatalog/Synthetic_Biology__A_New_Paradigm_for_Biological_D.html Synthetic Biology: A New Paradigm for Biological Discovery]


Selected References (sorted by publication date in descending order)

Synthetic biology through the prism of scenarios.
Biotechnol J. 2007 Aug 17; [Epub ahead of print]

Robustness Analysis and Tuning of Synthetic Gene Networks.
Bioinformatics. 2007 Jul 30; [Epub ahead of print]

Combinatorial promoter design for engineering noisy gene expression.
Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12726-31.

Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.
Methods Enzymol. 2007;422:488-512.

Nano-enabled synthetic biology.
Mol Syst Biol. 2007;3:125. Epub 2007 Jul 10.

Synthetic biology: designs for life.
Nature. 2007 Jul 5;448(7149):32-33.

Bioengineering novel in vitro metabolic pathways using synthetic biology.
Curr Opin Microbiol. 2007 Jun;10(3):246-53.

The economics of synthetic biology.
Molecular Systems Biology. 3:117-120, 2007.

Rebuilding microbial genomes.
Bioessays. 29(6):580-590, 2007.

A synthetic biology challenge: making cells compute.
Molecular BioSystems. 3:343-353, 2007.

Guiding bacteria with small molecules and RNA.
Journal of the American Chemical Society. 129(21):6807-6811, 2007.

Designing biological systems.
Genes & Development. 21:242-254, 2007.

Chemical aspects of synthetic biology.
Chemistry & Biodiversity. 4(4):603-621, 2007.

A bottom-up approach to gene regulation.
Nature 30: 979, 2006

Regulation of flagella.
Curr Opin Microbiol 6: 869, 2006

Regulatory dynamics of synthetic gene networks with positive feedback.
J Mol Biol 5: 239, 2006

Synthetic biology: new engineering rules for an emerging discipline.
Mol Syst Biol, 2006

A synthetic multicellular system for programmed pattern formation.
Nature 30: 979, 2005

A synthetic gene-metabolic oscillator.
Nature 30: 979, 2005

Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.
Science 29: 162, 2005

Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.
Nat Biotechnol 17: 721, 2005

Hysteresis in a synthetic mammalian gene network.
Proc Natl Acad Sci U S A 10: 272, 2005

Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.
Proc Natl Acad Sci U S A 10: 272, 2005

Semi-synthetic mammalian gene regulatory networks.
Metab Eng 3: 397, 2005

Transcriptional regulation and metabolism.
Biochem Soc Trans 2: 579, 2005

Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system.
Biotechnol Bioeng 2: 173, 2005

A network of orthogonal ribosome x mRNA pairs.
Nat Chem Biol, 2005

Programmed population control by cell-cell communication and regulated killing.
Nature 30: 979, 2004

Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.
Cell 26: 626, 2004

An engineered epigenetic transgene switch in mammalian cells.
Nat Biotechnol 17: 721, 2004

Programmable cells: interfacing natural and engineered gene networks.
Proc Natl Acad Sci U S A 10: 272, 2004

Design of artificial cell-cell communication using gene and metabolic networks.
Proc Natl Acad Sci U S A 101:2299-304, 2004

Spatiotemporal control of gene expression with pulse-generating networks.
Proc Natl Acad Sci U S A 10: 272, 2004

Optimizing genetic circuits by global sensitivity analysis.
Biophys J 4: 463, 2004

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
Cell 26: 626, 2003

Combinatorial synthesis of genetic networks.
Science 29: 162, 2002

Directed evolution of a genetic circuit.
Proc Natl Acad Sci U S A 10: 272, 2002

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.
EMBO J 10: 456, 2001

A synthetic oscillatory network of transcriptional regulators.
Nature 30: 979, 2000

Engineering stability in gene networks by autoregulation.
Nature 30: 979, 2000

Construction of a genetic toggle switch in Escherichia coli.
Nature 30: 979, 2000

 


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