Edinburgh/Yoghurt/References

From 2007.igem.org

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'''Vanilla Flavour'''
'''Vanilla Flavour'''
-
[http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete Saccharothrix esanaensis, Berner M, et al, Journal of Bacteriology 188(7): 2666, (2006)]
+
[http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete ''Saccharothrix espanaensis''. Berner M, et al, Journal of Bacteriology 188(7): 2666, (2006)]
-
Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis, Plant Physiology 97(1):7 (1991)
+
Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis. Plant Physiology 97(1):7 (1991)
-
Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin, Guo D, et al, Plant Cell. January; 13(1): 73 (2001)
+
Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin. Guo D, et al, Plant Cell. January; 13(1): 73 (2001)
-
Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6, E Masai, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(9): 4416–4424 (2002)
+
Cloning and Characterization of the Ferulic Acid Catabolic Genes of ''Sphingomonas paucimobilis'' SYK-6. E Masai, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(9): 4416–4424 (2002)
-
Vanillin production using metabolically engineered Escherichia coli under non-growing conditions, P Barghini, et al, Microbial Cell Factories, 6:13 (2007)
+
Vanillin production using metabolically engineered ''Escherichia coli'' under non-growing conditions. P Barghini, et al, Microbial Cell Factories, 6:13 (2007)
-
Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein, JA Kyndt et al, FEBS Letters 512: 240-244 (2002)
+
Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein. JA Kyndt et al, FEBS Letters 512: 240-244 (2002)
-
Vanilla flavour: production by conventional and biotechnological routes, S Ramachandra Rao & GA Ravishankar, Journal of the Science of Food and Agriculture, 80:289-304 (2000)
+
Vanilla flavour: production by conventional and biotechnological routes. S Ramachandra Rao & GA Ravishankar, Journal of the Science of Food and Agriculture, 80:289-304 (2000)
-
Two O-Methyltransferases Isolated from Flower Petals of Rosa chinensis var. spontanea Involved in Scent Biosynthesis W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003)
+
Two O-Methyltransferases Isolated from Flower Petals of ''Rosa chinensis'' var. ''spontanea'' Involved in Scent Biosynthesis. W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003)
-
Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects, J Schrader, Biotechnology Letters, 26: 463–472 (2004)
+
Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects. J Schrader, Biotechnology Letters, 26: 463–472 (2004)
'''Lemon Flavour'''
'''Lemon Flavour'''
-
Monoterpene biosynthesis in lemon (Citrus limon) cDNA isolation and functional analysis of four monoterpene synthases, J Lucker, et al, Eur. J. Biochem. 269: 3160–3171 (2002)
+
Monoterpene biosynthesis in lemon (''Citrus limon''): cDNA isolation and functional analysis of four monoterpene synthases. J Lucker, et al, Eur. J. Biochem. 269: 3160–3171 (2002)
-
Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns, M Benincasa, et al, Chromatographia 30(5/6):271 (1990)
+
Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns. M Benincasa, et al, Chromatographia 30(5/6):271 (1990)
-
Citrus fruit flavour and aroma biosynthesis, L Sharon-Asa, The Plant Journal, 36:664 (2003)
+
Citrus fruit flavour and aroma biosynthesis. L Sharon-Asa, The Plant Journal, 36:664 (2003)
'''Strawberry Flavour'''
'''Strawberry Flavour'''
-
Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species, A Aharoni, et al, The Plant Cell, 16: 3110–3131 (2004)
+
Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species. A Aharoni, et al, The Plant Cell, 16: 3110–3131 (2004)
-
Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays, A Aharoni, et al, The Plant Cell, 12: 647–661, (2000)
+
Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays. A Aharoni, et al, The Plant Cell, 12: 647–661, (2000)
-
Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies, D Hampel, et al, J. Agric. Food Chem. 54: 1473-1478 (2006)
+
Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies. D Hampel, et al, J. Agric. Food Chem. 54: 1473-1478 (2006)
'''Colour Production'''
'''Colour Production'''
-
Metabolic Engineering of Anthocyanin Biosynthesis in Escherichia coli, Y Yan, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7): 3617–3623 (2005)
+
Metabolic Engineering of Anthocyanin Biosynthesis in ''Escherichia coli''. Y Yan, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7): 3617–3623 (2005)
-
Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains, N Sedkova, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(12): 8141–8146 (2005)
+
Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains. N Sedkova, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(12): 8141–8146 (2005)
-
Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in ''Escherichia coli'', N Misawa, et al, JOURNAL OF BACTERIOLOGY, 172(12): 6704-6712 (1990)
+
Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in ''Escherichia coli''. N Misawa, et al, JOURNAL OF BACTERIOLOGY, 172(12): 6704-6712 (1990)
'''Transformation into Lactobacillus'''
'''Transformation into Lactobacillus'''
-
Optimization of technical conditions for the transformation of ''Lactobacillus acidophilu''s strains by electroporation, YH Kim, et al, Journal of Applied Microbiology, 99: 167–174 (2005)
+
Optimization of technical conditions for the transformation of ''Lactobacillus acidophilu''s strains by electroporation. YH Kim, et al, Journal of Applied Microbiology, 99: 167–174 (2005)
'''Lycopene'''
'''Lycopene'''
-
Lycopene and prostate cancer, Ansari MS & Ansari S, Future Oncology, 1(3):425-30 (2005)
+
Lycopene and prostate cancer. Ansari MS & Ansari S, Future Oncology, 1(3):425-30 (2005)
-
Role of Antioxidant Lycopene in Cancer and Heart Disease, A. Venket Rao, Journal of the American College of Nutrition, 19(5): 563-569 (2000)
+
Role of Antioxidant Lycopene in Cancer and Heart Disease. A. Venket Rao, Journal of the American College of Nutrition, 19(5): 563-569 (2000)
'''Other'''
'''Other'''
-
Production of Plant-Specific Flavanones by ''Escherichia coli'' Containing an Artificial Gene Cluster, EI Hwang, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(5): 2699–2706 (2003)
+
Production of Plant-Specific Flavanones by ''Escherichia coli'' Containing an Artificial Gene Cluster. EI Hwang, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(5): 2699–2706 (2003)
-
Differential proteome analysis of selected lactic acid bacteria, stress response and database construction
+
Differential proteome analysis of selected lactic acid bacteria, stress response and database construction. Oliver Drews (2004)
-
Oliver Drews (2004)
+
-
On the puzzling arrangement of the asymmetric MalT-binding sites in the MalT-dependent promoters O Danot, & O Raibaud, Proc. Natl. Acad. Sci. USA, 90: 10999-11003 (1993)
+
On the puzzling arrangement of the asymmetric MalT-binding sites in the MalT-dependent promoters. O Danot, & O Raibaud, Proc. Natl. Acad. Sci. USA, 90: 10999-11003 (1993)
-
Maltose/Maltodextrin System of ''Escherichia coli'': Transport, Metabolism, and Regulation, W Boos & H Shuman, MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 62(1): 204–229 (1998)
+
Maltose/Maltodextrin System of ''Escherichia coli'': Transport, Metabolism, and Regulation. W Boos & H Shuman, MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 62(1): 204–229 (1998)
-
Construction of a combined physical and genetic map of the chromosome of ''Lactobacillus acidophilus'' ATCC 4356 and characterization of the rRNA operons, Youssef G, et al, Microbiology 151: 875–892 (2005)
+
Construction of a combined physical and genetic map of the chromosome of ''Lactobacillus acidophilus'' ATCC 4356 and characterization of the rRNA operons. Youssef G, et al, Microbiology 151: 875–892 (2005)
-
Cloning, Phenotypic Expression, and DNA Sequence of the Gene for Lactacin F, an Antimicrobial Peptide produced by ''Lactobacillus'' spp, PM, Muriana, JOURNAL OF BACTERIOLOGY, 173(5): 1779-1788 (1991)
+
Cloning, Phenotypic Expression, and DNA Sequence of the Gene for Lactacin F, an Antimicrobial Peptide produced by ''Lactobacillus'' spp. PM, Muriana, JOURNAL OF BACTERIOLOGY, 173(5): 1779-1788 (1991)
-
Analysis of promoter sequences from ''Lactobacillus'' and ''Lactococcus'' and their activity in several ''Lactobacillus'' species, A McCracken, et al, Arch Microbiol, 173 :383–389 (2000)
+
Analysis of promoter sequences from ''Lactobacillus'' and ''Lactococcus'' and their activity in several ''Lactobacillus'' species. A McCracken, et al, Arch Microbiol, 173 :383–389 (2000)

Revision as of 18:26, 26 October 2007


Edinburgh Uni Logo.jpg Introduction | Applications | Design | Modelling | Wet Lab | References


Vanilla Flavour

[http://jb.asm.org/cgi/content/abstract/188/7/2666 Genes and Enzymes Involved in Caffeic Acid Biosynthesis in the Actinomycete Saccharothrix espanaensis. Berner M, et al, Journal of Bacteriology 188(7): 2666, (2006)]

Gowri G, et al, Molecular cloning and expression of alfalfa S-adenosyl-L-methionine: caffeic acid 3-O-methyltransferase, a key enzyme of lignin biosynthesis. Plant Physiology 97(1):7 (1991)

Downregulation of Caffeic Acid 3-O-Methyltransferase and Caffeoyl CoA 3-O-Methyltransferase in Transgenic Alfalfa Impacts on Lignin Structure and Implications for the Biosynthesis of G and S Lignin. Guo D, et al, Plant Cell. January; 13(1): 73 (2001)

Cloning and Characterization of the Ferulic Acid Catabolic Genes of Sphingomonas paucimobilis SYK-6. E Masai, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(9): 4416–4424 (2002)

Vanillin production using metabolically engineered Escherichia coli under non-growing conditions. P Barghini, et al, Microbial Cell Factories, 6:13 (2007)

Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow Protein. JA Kyndt et al, FEBS Letters 512: 240-244 (2002)

Vanilla flavour: production by conventional and biotechnological routes. S Ramachandra Rao & GA Ravishankar, Journal of the Science of Food and Agriculture, 80:289-304 (2000)

Two O-Methyltransferases Isolated from Flower Petals of Rosa chinensis var. spontanea Involved in Scent Biosynthesis. W Shuiqin, et al, Journal of Bioscience and Bioengineering, 96(2): 119-128 (2003)

Applied biocatalysis for the synthesis of natural flavour compounds – current industrial processes and future prospects. J Schrader, Biotechnology Letters, 26: 463–472 (2004)


Lemon Flavour

Monoterpene biosynthesis in lemon (Citrus limon): cDNA isolation and functional analysis of four monoterpene synthases. J Lucker, et al, Eur. J. Biochem. 269: 3160–3171 (2002)

Analysis of Lemon and Bergamot Essential Oils by HPLC with Microbore Columns. M Benincasa, et al, Chromatographia 30(5/6):271 (1990)

Citrus fruit flavour and aroma biosynthesis. L Sharon-Asa, The Plant Journal, 36:664 (2003)


Strawberry Flavour

Gain and Loss of Fruit Flavor Compounds Produced by Wild and Cultivated Strawberry Species. A Aharoni, et al, The Plant Cell, 16: 3110–3131 (2004)

Identification of the SAAT Gene Involved in Strawberry Flavor Biogenesis by Use of DNA Microarrays. A Aharoni, et al, The Plant Cell, 12: 647–661, (2000)

Biosynthesis of Mono- and Sesquiterpenes in Strawberry Fruits and Foliage: 2H Labeling Studies. D Hampel, et al, J. Agric. Food Chem. 54: 1473-1478 (2006)


Colour Production

Metabolic Engineering of Anthocyanin Biosynthesis in Escherichia coli. Y Yan, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(7): 3617–3623 (2005)

Diversity of Carotenoid Synthesis Gene Clusters from Environmental Enterobacteriaceae Strains. N Sedkova, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(12): 8141–8146 (2005)

Elucidation of the Erwinia uredovora Carotenoid Biosynthetic Pathway by Functional Analysis of Gene Products Expressed in Escherichia coli. N Misawa, et al, JOURNAL OF BACTERIOLOGY, 172(12): 6704-6712 (1990)


Transformation into Lactobacillus

Optimization of technical conditions for the transformation of Lactobacillus acidophilus strains by electroporation. YH Kim, et al, Journal of Applied Microbiology, 99: 167–174 (2005)


Lycopene

Lycopene and prostate cancer. Ansari MS & Ansari S, Future Oncology, 1(3):425-30 (2005)

Role of Antioxidant Lycopene in Cancer and Heart Disease. A. Venket Rao, Journal of the American College of Nutrition, 19(5): 563-569 (2000)


Other

Production of Plant-Specific Flavanones by Escherichia coli Containing an Artificial Gene Cluster. EI Hwang, et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(5): 2699–2706 (2003)

Differential proteome analysis of selected lactic acid bacteria, stress response and database construction. Oliver Drews (2004)

On the puzzling arrangement of the asymmetric MalT-binding sites in the MalT-dependent promoters. O Danot, & O Raibaud, Proc. Natl. Acad. Sci. USA, 90: 10999-11003 (1993)

Maltose/Maltodextrin System of Escherichia coli: Transport, Metabolism, and Regulation. W Boos & H Shuman, MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 62(1): 204–229 (1998)

Construction of a combined physical and genetic map of the chromosome of Lactobacillus acidophilus ATCC 4356 and characterization of the rRNA operons. Youssef G, et al, Microbiology 151: 875–892 (2005)

Cloning, Phenotypic Expression, and DNA Sequence of the Gene for Lactacin F, an Antimicrobial Peptide produced by Lactobacillus spp. PM, Muriana, JOURNAL OF BACTERIOLOGY, 173(5): 1779-1788 (1991)

Analysis of promoter sequences from Lactobacillus and Lactococcus and their activity in several Lactobacillus species. A McCracken, et al, Arch Microbiol, 173 :383–389 (2000)



Introduction | Applications | Design | Modelling | Wet Lab | References