Virginia Tech/Updates/Phage

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<center><h1><font color="#ff8c00"> Welcome to the 2007 Virginia Tech iGEM wiki!</font></h1></center>
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<html><a href="https://2007.igem.org/Virginia_Tech"><img src="https://static.igem.org/mediawiki/2007/9/9f/VT_logo_sm.jpg" alt="Home"></a></html>
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<center><h3><font color="#8b0000"> This wiki is under construction! While you’re waiting, check out our internally hosted wiki [https://wiki.vbi.vt.edu/display/SBGi/iGEM+2007 here].
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<html><center><A href="https://2007.igem.org/Virginia_Tech" target=_top><h3><FONT color=#ff8c00>Home</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Project" target=_top><h3><FONT color=#ff8c00>Project</FONT></h3></A></center></html>
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<html><center><img src="https://static.igem.org/mediawiki/2007/9/9c/VtiGEM_crestMark1.png" alt="Virginia Tech iGEM 2007" width="505" height="400"></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Team" target=_top><h3><FONT color=#ff8c00>Team</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Photos" target=_top><h3><FONT color=#ff8c00>Photo Gallery</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Project" target=_top><h3><FONT color=#ff8c00>Project</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/JC" target=_top><h3><FONT color=#ff8c00>Journal Club</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Links" target=_top><h3><FONT color=#ff8c00>Links</FONT></h3></A></center></html>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Team" target=_top><h3><FONT color=#ff8c00>Team</FONT></h3></A></center></html>
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<html><center><A href="mailto:igem@vt.edu" target=_top><h3><FONT color=#ff8c00>Contact
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Updates" target=_top><h3><FONT color=#ff8c00>Progress Updates</FONT></h3></A></center></html>
 
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Photos" target=_top><h3><FONT color=#ff8c00>Photo Gallery</FONT></h3></A></center></html>
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<center><h1><font color="#ff8c00"> Phage Culture Updates:  
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</font></h1></center>
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<center><h3><font color="#8b0000"> VT iGEM Project 2007: Engineering an Epidemic</font></h3></center>
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<html><center><A href="https://2007.igem.org/Virginia_Tech/JC" target=_top><h3><FONT color=#ff8c00>Journal Club</FONT></h3></A></center></html>
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<p><h3>Introduction: Bacteriophage Lambda</h3>
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Lambda phage is a well-known and extensively used vector in molecular biology. Lambda is a bacteria virus that can take two different pathways after entering a cell:
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<html><ul>
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<li><b>The most common pathway is the lytic pathway.</b> Upon entering the cell, the virus commands the
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cellular machinery to make new phage particles and, within about 45 minutes, lyses the cell.</li>
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<li><b>Alternatively, lambda can enter the lysogenic pathway.</b> The viral genome is incorporated into the cell's chromosomal DNA and remains dormant until the right conditions arise (usually involving cellular stress). </li>
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</ul></html></p>
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<p>Lambda's decision is controlled by the lambda promoter. If enough cI is produced first, the cell becomes lysogenic. If Cro predominates, the cell goes lytic and bursts.<br>
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[[Image:Lambda_Pr.JPG]]</p>
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<p><h3>Updates</h3></p>
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<p>'''First Progress Update'''<br>
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''July 11, 2007''</p>
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<p>Since no one in our lab had worked with phage before, being able to create and use the lysates has been a learning experience.  We have relied heavily on Tim Larson, a faculty adviser from Biology, to help us work through the issues we've come across.  We are currently working with two types of phage: Lambda ATCC, a wild-type phage, and Lambda EYFP, a fluorescent phage.  Here is what we've accomplished so far with each:</p>
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<p>Lambda ATCC:</p>
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<li>1) Create a high-titer lysate.</li>
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<li>2) Infect plates of all 3 strains of E. coli we are working with: LE392, ATCC C600, and a NEB strain.  All 3 form plaques approximately equally. </li>
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<li>3) View lysis in liquid cultures.</li>
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<li>4) Pending: Examine how liquid cultures behave with different amounts of phage using a microtiter plate reader which takes OD readings over time.</li>
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</ul></html>
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<html><center><A href="mailto:igem@vt.edu" target=_top><h3><FONT color=#ff8c00>Contact
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<p>Lambda EYFP:</p>
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<li>1) Induce NM538 lysogens and create a lysate.</li>
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<li>2) Infect plates of all 3 strains of bacteria we are working with: LE392, ATCC C600, and a NEB strain.  The LE392 plate formed plaques at higher dilutions than did either the C600 or NEB plates, which performed the same.</li>
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<li>3) Pending: Understand why the LE392 plate performed differently.</li>
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<li>4) Pending: View the fluorescence, if possible, using microscopy.</li>
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<center><h3><font color="#8b0000"> Thanks to our Sponsors:</font></h3></center>
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<a href="http://www.thirdsecurity.com">
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<a href="http://www.vbi.vt.edu">
 
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<img src="https://static.igem.org/mediawiki/2007/0/0b/VBI_logo.jpg"></a>
 
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<a href="http://www.eng.vt.edu/main/index.php">
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<html><center><A href="https://2007.igem.org/Virginia_Tech/Updates" target=_top><h3><FONT color=#ff8c00>Return to Progress Updates</FONT></h3></A></center></html>
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<a href="http://www.cos.vt.edu">
 
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<img src=" https://static.igem.org/mediawiki/2007/d/d3/COS_logo.jpg "></a>
 
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<a href="http://www.cals.vt.edu"><img src="https://static.igem.org/mediawiki/2007/4/46/CALS_logo.JPG"></a></html>
 
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Latest revision as of 16:51, 24 July 2007

Home

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Phage Culture Updates:

VT iGEM Project 2007: Engineering an Epidemic

Introduction: Bacteriophage Lambda

Lambda phage is a well-known and extensively used vector in molecular biology. Lambda is a bacteria virus that can take two different pathways after entering a cell:

  • The most common pathway is the lytic pathway. Upon entering the cell, the virus commands the cellular machinery to make new phage particles and, within about 45 minutes, lyses the cell.
  • Alternatively, lambda can enter the lysogenic pathway. The viral genome is incorporated into the cell's chromosomal DNA and remains dormant until the right conditions arise (usually involving cellular stress).

Lambda's decision is controlled by the lambda promoter. If enough cI is produced first, the cell becomes lysogenic. If Cro predominates, the cell goes lytic and bursts.
Lambda Pr.JPG

Updates

First Progress Update
July 11, 2007

Since no one in our lab had worked with phage before, being able to create and use the lysates has been a learning experience. We have relied heavily on Tim Larson, a faculty adviser from Biology, to help us work through the issues we've come across. We are currently working with two types of phage: Lambda ATCC, a wild-type phage, and Lambda EYFP, a fluorescent phage. Here is what we've accomplished so far with each:

Lambda ATCC:

  • 1) Create a high-titer lysate.
  • 2) Infect plates of all 3 strains of E. coli we are working with: LE392, ATCC C600, and a NEB strain. All 3 form plaques approximately equally.
  • 3) View lysis in liquid cultures.
  • 4) Pending: Examine how liquid cultures behave with different amounts of phage using a microtiter plate reader which takes OD readings over time.

Lambda EYFP:

  • 1) Induce NM538 lysogens and create a lysate.
  • 2) Infect plates of all 3 strains of bacteria we are working with: LE392, ATCC C600, and a NEB strain. The LE392 plate formed plaques at higher dilutions than did either the C600 or NEB plates, which performed the same.
  • 3) Pending: Understand why the LE392 plate performed differently.
  • 4) Pending: View the fluorescence, if possible, using microscopy.



Return to Progress Updates